View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5682-20 (Length: 138)
Name: Solexa-NF5682-20
Description: NF5682
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5682-20 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 116; Significance: 2e-59; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 116; E-Value: 2e-59
Query Start/End: Original strand, 3 - 138
Target Start/End: Original strand, 38341245 - 38341380
Alignment:
| Q |
3 |
acaacgcataatatatgtaatttggggttcaaacccggccatcacaaaaacaaaagtatggttctggtccggaagagatgaaatatgagcaaattgaaaa |
102 |
Q |
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| T |
38341245 |
acaacacataatatatgtaatccgaggttcaaacccggccatcacaaaaacaaaagtatggttctggtccggaagagatgaaatatgagcaaattgaaaa |
38341344 |
T |
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| Q |
103 |
tttaacttcataccctacatttgtacatttaccctt |
138 |
Q |
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| T |
38341345 |
tttaacttcatagcctacatttgtacatttaccctt |
38341380 |
T |
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Target: chr1; HSP #2
Raw Score: 61; E-Value: 1e-26
Query Start/End: Original strand, 74 - 138
Target Start/End: Original strand, 38445509 - 38445573
Alignment:
| Q |
74 |
gaagagatgaaatatgagcaaattgaaaatttaacttcataccctacatttgtacatttaccctt |
138 |
Q |
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| T |
38445509 |
gaagagatgaaatatgagcaaattgaaaatttaacttcatagcctacatttgtacatttaccctt |
38445573 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 92 - 124
Target Start/End: Original strand, 38472267 - 38472299
Alignment:
| Q |
92 |
caaattgaaaatttaacttcataccctacattt |
124 |
Q |
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| T |
38472267 |
caaattgaaaatttaacttcataccccacattt |
38472299 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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