View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5682-21 (Length: 137)
Name: Solexa-NF5682-21
Description: NF5682
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5682-21 |
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Alignment Details
Target: chr5 (Bit Score: 49; Significance: 2e-19; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 49; E-Value: 2e-19
Query Start/End: Original strand, 2 - 50
Target Start/End: Original strand, 41522381 - 41522429
Alignment:
| Q |
2 |
atgaatactcaagcagaaacttggaaaataaggataatttgcaattttt |
50 |
Q |
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| T |
41522381 |
atgaatactcaagcagaaacttggaaaataaggataatttgcaattttt |
41522429 |
T |
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Target: chr5; HSP #2
Raw Score: 46; E-Value: 1e-17
Query Start/End: Original strand, 92 - 137
Target Start/End: Original strand, 41513505 - 41513550
Alignment:
| Q |
92 |
cctcagatgagacactctaggttcggctaaaagaatcaataacaac |
137 |
Q |
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| T |
41513505 |
cctcagatgagacactctaggttcggctaaaagaatcaataacaac |
41513550 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 46; E-Value: 1e-17
Query Start/End: Original strand, 92 - 137
Target Start/End: Original strand, 41522471 - 41522516
Alignment:
| Q |
92 |
cctcagatgagacactctaggttcggctaaaagaatcaataacaac |
137 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41522471 |
cctcagatgagacactctaggttcggctaaaagaatcaataacaac |
41522516 |
T |
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