View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5682-24 (Length: 130)
Name: Solexa-NF5682-24
Description: NF5682
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5682-24 |
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| [»] chr7 (1 HSPs) |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 98; Significance: 5e-49; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 98; E-Value: 5e-49
Query Start/End: Original strand, 23 - 130
Target Start/End: Original strand, 14740049 - 14740156
Alignment:
| Q |
23 |
aaaactaaaggcacaatgtcaataggcatcatttctaaatatactaaagaaaatgaaaawtgacgagaaaacgaacaaacatacctgaaaagtatcactt |
122 |
Q |
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| T |
14740049 |
aaaaataaaggcacaatgtcaataggcatcatttctaaatatactaaagaaaatgaaaaatgacgagaaaaccaacaaacatacctgaaaagtatcactt |
14740148 |
T |
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| Q |
123 |
gtcatagt |
130 |
Q |
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| T |
14740149 |
gtcatagt |
14740156 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 74; Significance: 1e-34; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 74; E-Value: 1e-34
Query Start/End: Original strand, 20 - 130
Target Start/End: Complemental strand, 17586157 - 17586047
Alignment:
| Q |
20 |
cacaaaactaaaggca-caatgtcaataggcatcatttctaaatatactaaagaaaatgaaaawtgacgagaaaacgaacaaacatacctgaaaagtatc |
118 |
Q |
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|||||||| ||||||| |||||||||||||||||| || ||||||||||||||||||| |||| |||||||||||| |||||| |||||||||||||||| |
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| T |
17586157 |
cacaaaacaaaaggcaacaatgtcaataggcatcacttgtaaatatactaaagaaaat-aaaaatgacgagaaaacaaacaaagatacctgaaaagtatc |
17586059 |
T |
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| Q |
119 |
acttgtcatagt |
130 |
Q |
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| T |
17586058 |
acttgtcatagt |
17586047 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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