View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: Solexa-NF5682-26 (Length: 127)

Name: Solexa-NF5682-26
Description: NF5682
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] Solexa-NF5682-26
Solexa-NF5682-26
[»] chr1 (2 HSPs)
chr1 (8-127)||(38342301-38342420)
chr1 (8-127)||(38446494-38446613)
[»] chr5 (7 HSPs)
chr5 (8-100)||(38447031-38447123)
chr5 (23-100)||(38180565-38180642)
chr5 (23-100)||(38190489-38190566)
chr5 (23-100)||(38207789-38207866)
chr5 (23-100)||(38217714-38217791)
chr5 (23-100)||(38455925-38456002)
chr5 (26-100)||(26033617-26033691)
[»] chr4 (1 HSPs)
chr4 (35-100)||(53352034-53352099)


Alignment Details
Target: chr1 (Bit Score: 120; Significance: 8e-62; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 120; E-Value: 8e-62
Query Start/End: Original strand, 8 - 127
Target Start/End: Complemental strand, 38342420 - 38342301
Alignment:
Q  8 gcaagtcccgtgttctttgatacctctttccaatttccggttccatgtttttcaacatatgcttttaatatttcatcctcttcttttgaccataatgttc 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38342420 gcaagtcccgtgttctttgatacctctttccaatttccggttccatgtttttcaacatatgcttttaatatttcatcctcttcttttgaccataatgttc 38342321  T
Q  108 ctttcttcaaccttttatta 127  Q
    ||||||||||||||||||||    
T  38342320 ctttcttcaaccttttatta 38342301  T

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Target: chr1; HSP #2
Raw Score: 120; E-Value: 8e-62
Query Start/End: Original strand, 8 - 127
Target Start/End: Complemental strand, 38446613 - 38446494
Alignment:
Q  8 gcaagtcccgtgttctttgatacctctttccaatttccggttccatgtttttcaacatatgcttttaatatttcatcctcttcttttgaccataatgttc 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38446613 gcaagtcccgtgttctttgatacctctttccaatttccggttccatgtttttcaacatatgcttttaatatttcatcctcttcttttgaccataatgttc 38446514  T
Q  108 ctttcttcaaccttttatta 127  Q
    ||||||||||||||||||||    
T  38446513 ctttcttcaaccttttatta 38446494  T

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Target: chr5 (Bit Score: 73; Significance: 9e-34; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 73; E-Value: 9e-34
Query Start/End: Original strand, 8 - 100
Target Start/End: Complemental strand, 38447123 - 38447031
Alignment:
Q  8 gcaagtcccgtgttctttgatacctctttccaatttccggttccatgtttttcaacatatgcttttaatatttcatcctcttcttttgaccat 100  Q
    |||||||| ||||||||||||||||| | |||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  38447123 gcaagtcctgtgttctttgatacctcgtcccaatttctggttccatgtttttccacatatgcttttaatatttcatcctcttcttttgaccat 38447031  T

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Target: chr5; HSP #2
Raw Score: 62; E-Value: 3e-27
Query Start/End: Original strand, 23 - 100
Target Start/End: Complemental strand, 38180642 - 38180565
Alignment:
Q  23 tttgatacctctttccaatttccggttccatgtttttcaacatatgcttttaatatttcatcctcttcttttgaccat 100  Q
    ||||||||||| |||||||||| ||||||||||||||| ||||||||||||||||||||||| |||||||||||||||    
T  38180642 tttgatacctcgttccaatttctggttccatgtttttccacatatgcttttaatatttcatcttcttcttttgaccat 38180565  T

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Target: chr5; HSP #3
Raw Score: 62; E-Value: 3e-27
Query Start/End: Original strand, 23 - 100
Target Start/End: Original strand, 38190489 - 38190566
Alignment:
Q  23 tttgatacctctttccaatttccggttccatgtttttcaacatatgcttttaatatttcatcctcttcttttgaccat 100  Q
    ||||||||||| |||||||||| ||||||||||||||| ||||||||||||||||||||||| |||||||||||||||    
T  38190489 tttgatacctcgttccaatttctggttccatgtttttccacatatgcttttaatatttcatcttcttcttttgaccat 38190566  T

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Target: chr5; HSP #4
Raw Score: 62; E-Value: 3e-27
Query Start/End: Original strand, 23 - 100
Target Start/End: Complemental strand, 38207866 - 38207789
Alignment:
Q  23 tttgatacctctttccaatttccggttccatgtttttcaacatatgcttttaatatttcatcctcttcttttgaccat 100  Q
    ||||||||||| |||||||||| ||||||||||||||| ||||||||||||||||||||||| |||||||||||||||    
T  38207866 tttgatacctcgttccaatttctggttccatgtttttccacatatgcttttaatatttcatcttcttcttttgaccat 38207789  T

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Target: chr5; HSP #5
Raw Score: 62; E-Value: 3e-27
Query Start/End: Original strand, 23 - 100
Target Start/End: Original strand, 38217714 - 38217791
Alignment:
Q  23 tttgatacctctttccaatttccggttccatgtttttcaacatatgcttttaatatttcatcctcttcttttgaccat 100  Q
    ||||||||||| |||||||||| ||||||||||||||| ||||||||||||||||||||||| |||||||||||||||    
T  38217714 tttgatacctcgttccaatttctggttccatgtttttccacatatgcttttaatatttcatcttcttcttttgaccat 38217791  T

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Target: chr5; HSP #6
Raw Score: 62; E-Value: 3e-27
Query Start/End: Original strand, 23 - 100
Target Start/End: Complemental strand, 38456002 - 38455925
Alignment:
Q  23 tttgatacctctttccaatttccggttccatgtttttcaacatatgcttttaatatttcatcctcttcttttgaccat 100  Q
    ||||||||||| |||||||||| ||||||||||||||| ||||||||||||||||||||||| |||||||||||||||    
T  38456002 tttgatacctcgttccaatttctggttccatgtttttccacatatgcttttaatatttcatcttcttcttttgaccat 38455925  T

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Target: chr5; HSP #7
Raw Score: 55; E-Value: 5e-23
Query Start/End: Original strand, 26 - 100
Target Start/End: Original strand, 26033617 - 26033691
Alignment:
Q  26 gatacctctttccaatttccggttccatgtttttcaacatatgcttttaatatttcatcctcttcttttgaccat 100  Q
    |||||||| |||||||||| ||||||||| ||||| ||||||||||||||||||||||| |||||||||||||||    
T  26033617 gatacctcgttccaatttctggttccatggttttccacatatgcttttaatatttcatcttcttcttttgaccat 26033691  T

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Target: chr4 (Bit Score: 54; Significance: 2e-22; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 2e-22
Query Start/End: Original strand, 35 - 100
Target Start/End: Original strand, 53352034 - 53352099
Alignment:
Q  35 ttccaatttccggttccatgtttttcaacatatgcttttaatatttcatcctcttcttttgaccat 100  Q
    |||||||||| ||||||||||||||| |||||||||||||| ||||||||||||||||||||||||    
T  53352034 ttccaatttctggttccatgtttttccacatatgcttttaacatttcatcctcttcttttgaccat 53352099  T

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