View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5682-30 (Length: 123)
Name: Solexa-NF5682-30
Description: NF5682
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5682-30 |
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| [»] scaffold0459 (1 HSPs) |
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| [»] scaffold0366 (1 HSPs) |
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Alignment Details
Target: scaffold0459 (Bit Score: 58; Significance: 8e-25; HSPs: 1)
Name: scaffold0459
Description:
Target: scaffold0459; HSP #1
Raw Score: 58; E-Value: 8e-25
Query Start/End: Original strand, 8 - 85
Target Start/End: Original strand, 5462 - 5539
Alignment:
| Q |
8 |
gaatggcaagggaaacaatattccagctattggaatccatgtcactccaaaacaaaccaagaaatacacgcattggaa |
85 |
Q |
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| T |
5462 |
gaatggcaaagggaacaacattccagcaattggaatccatgtcactccaaaacaaaccaagaaatacacacattggaa |
5539 |
T |
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Target: scaffold0366 (Bit Score: 58; Significance: 8e-25; HSPs: 1)
Name: scaffold0366
Description:
Target: scaffold0366; HSP #1
Raw Score: 58; E-Value: 8e-25
Query Start/End: Original strand, 8 - 85
Target Start/End: Original strand, 5462 - 5539
Alignment:
| Q |
8 |
gaatggcaagggaaacaatattccagctattggaatccatgtcactccaaaacaaaccaagaaatacacgcattggaa |
85 |
Q |
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||||||||| || ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
5462 |
gaatggcaaagggaacaacattccagcaattggaatccatgtcactccaaaacaaaccaagaaatacacacattggaa |
5539 |
T |
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