View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5682-31 (Length: 112)
Name: Solexa-NF5682-31
Description: NF5682
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5682-31 |
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| [»] chr5 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 104; Significance: 2e-52; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 104; E-Value: 2e-52
Query Start/End: Original strand, 5 - 112
Target Start/End: Original strand, 40805358 - 40805465
Alignment:
| Q |
5 |
tgaatgttgattcttaagacttgacaacatcatgtcaaaaactcgagctactgtaaaaaattgctctgctgtaccacaaacataagctagaccagcattg |
104 |
Q |
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| T |
40805358 |
tgaatgttgattcttaagacttgacaacatcatgtcaaaaactcgagctactgtaaaaaattgctctgctgtatcacaaacataagctagaccagcattg |
40805457 |
T |
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| Q |
105 |
tctaacaa |
112 |
Q |
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| T |
40805458 |
tctaacaa |
40805465 |
T |
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Target: chr8 (Bit Score: 30; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 91
Target Start/End: Complemental strand, 45160899 - 45160838
Alignment:
| Q |
30 |
aacatcatgtcaaaaactcgagctactgtaaaaaattgctctgctgtaccacaaacataagc |
91 |
Q |
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| T |
45160899 |
aacatcatgtccaaaactcgacgtactgcaaaaaaccgctctgctgtagcacaaacgtaagc |
45160838 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 28; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 28; E-Value: 0.0000005
Query Start/End: Original strand, 5 - 112
Target Start/End: Complemental strand, 16341775 - 16341668
Alignment:
| Q |
5 |
tgaatgttgattcttaagacttgacaacatcatgtcaaaaactcgagctactgtaaaaaattgctctgctgtaccacaaacataagctagaccagcattg |
104 |
Q |
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|||| ||||||||| |||||||| |||||||||||| |||| ||| | ||| | ||||||||||| |||| || ||||||| || | || | ||||| |
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| T |
16341775 |
tgaaggttgattctcaagacttgtcaacatcatgtccaaaagtcgtgttacggatgaaaattgctctcttgtatcataaacatatgccaaactatcattg |
16341676 |
T |
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| Q |
105 |
tctaacaa |
112 |
Q |
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| T |
16341675 |
tctaacaa |
16341668 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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