View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: Solexa-NF5682-37 (Length: 89)

Name: Solexa-NF5682-37
Description: NF5682
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] Solexa-NF5682-37
Solexa-NF5682-37
[»] chr8 (3 HSPs)
chr8 (5-89)||(41805189-41805273)
chr8 (10-86)||(41812017-41812093)
chr8 (7-86)||(41798798-41798877)


Alignment Details
Target: chr8 (Bit Score: 85; Significance: 4e-41; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 85; E-Value: 4e-41
Query Start/End: Original strand, 5 - 89
Target Start/End: Original strand, 41805189 - 41805273
Alignment:
Q  5 ggccgctgacaatgaagcttttcatgaaactatcacaagtactaaagagtggttcaacagtgtgatatctggaatcgatactgta 89  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41805189 ggccgctgacaatgaagcttttcatgaaactatcacaagtactaaagagtggttcaacagtgtgatatctggaatcgatactgta 41805273  T

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Target: chr8; HSP #2
Raw Score: 49; E-Value: 1e-19
Query Start/End: Original strand, 10 - 86
Target Start/End: Original strand, 41812017 - 41812093
Alignment:
Q  10 ctgacaatgaagcttttcatgaaactatcacaagtactaaagagtggttcaacagtgtgatatctggaatcgatact 86  Q
    |||||||||||||||||||||||||||||||||||| |||| ||||  |||||||| |||||||||| || ||||||    
T  41812017 ctgacaatgaagcttttcatgaaactatcacaagtattaaaaagtgtgtcaacagtatgatatctgggatagatact 41812093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 5e-19
Query Start/End: Original strand, 7 - 86
Target Start/End: Original strand, 41798798 - 41798877
Alignment:
Q  7 ccgctgacaatgaagcttttcatgaaactatcacaagtactaaagagtggttcaacagtgtgatatctggaatcgatact 86  Q
    ||||| ||||||||||||||||||||||||||||||||  ||||| |||  ||||||||||||||||||| || ||||||    
T  41798798 ccgctaacaatgaagcttttcatgaaactatcacaagtgttaaagtgtgtgtcaacagtgtgatatctgggatagatact 41798877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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