View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5682-38 (Length: 88)
Name: Solexa-NF5682-38
Description: NF5682
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5682-38 |
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Alignment Details
Target: chr8 (Bit Score: 62; Significance: 2e-27; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 62; E-Value: 2e-27
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 41804780 - 41804841
Alignment:
| Q |
1 |
gaacattagcagaacgagcagatgcatatcagaatttgaataaagaatatgaacaagttaac |
62 |
Q |
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| T |
41804780 |
gaacattagcagaacgagcagatgcatatcagaatttgaataaagaatatgaacaagttaac |
41804841 |
T |
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Target: chr8; HSP #2
Raw Score: 28; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 41798387 - 41798442
Alignment:
| Q |
1 |
gaacattagcagaacgagcagatgcatatcagaatttgaataaagaatatgaacaa |
56 |
Q |
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| T |
41798387 |
gaacattggaagaacaagaagatgcatatcagaagttgaatgaagaatataaacaa |
41798442 |
T |
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