View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5682-4 (Length: 205)
Name: Solexa-NF5682-4
Description: NF5682
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5682-4 |
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Alignment Details
Target: chr3 (Bit Score: 181; Significance: 5e-98; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 181; E-Value: 5e-98
Query Start/End: Original strand, 8 - 204
Target Start/End: Original strand, 36463311 - 36463507
Alignment:
| Q |
8 |
gttctactacattttctttgctattatcttcctcttccttctcttcaagagaataatactaactcacaatcccaaaaaccatatttcacacttcaccact |
107 |
Q |
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| T |
36463311 |
gttctacttcattttctttgctattatcttcctcttccttctcttcaagagaataatactaactcacaatcccaaaaaccatatttcatatttcaccact |
36463410 |
T |
|
| Q |
108 |
tctactcacacccctccttcataccccatcataggttgccttatctcattctgcaaaaacagccaccgccttctagatttctacactcaccttctct |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36463411 |
tctactcacacccctccttcataccccatcataggttgccttatctcattctacaaaaacagccaccgccttctagatttctacactcaccttctct |
36463507 |
T |
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