View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: Solexa-NF5682-40 (Length: 72)
Name: Solexa-NF5682-40
Description: NF5682
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5682-40 |
 | |
|
| [»] chr5 (1 HSPs) |
| |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 61; Significance: 6e-27; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 61; E-Value: 6e-27
Query Start/End: Original strand, 8 - 72
Target Start/End: Original strand, 17585120 - 17585184
Alignment:
| Q |
8 |
atcaccagatctacctaagatcaaaaaacataatgctggtgacatgaaagatatgataagcaaca |
72 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17585120 |
atcaccagatttacctaagatcaaaaaacataatgctggtgacatgaaagatatgataagcaaca |
17585184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 58; Significance: 4e-25; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 58; E-Value: 4e-25
Query Start/End: Original strand, 11 - 72
Target Start/End: Complemental strand, 14741073 - 14741012
Alignment:
| Q |
11 |
accagatctacctaagatcaaaaaacataatgctggtgacatgaaagatatgataagcaaca |
72 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14741073 |
accagatttacctaagatcaaaaaacataatgctggtgacatgaaagatatgataagcaaca |
14741012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University