View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5682-6 (Length: 182)
Name: Solexa-NF5682-6
Description: NF5682
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5682-6 |
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| [»] chr3 (8 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 143; Significance: 2e-75; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 143; E-Value: 2e-75
Query Start/End: Original strand, 22 - 182
Target Start/End: Original strand, 23359923 - 23360080
Alignment:
| Q |
22 |
tgtacaatatcaaagtttgcaccataataacaacaaccgcaatttatacacacgagttagcaatcattttggtcattgaatgtgtctggcgctattgcta |
121 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23359923 |
tgtacaatatcaaagtttgcaccataa---caacaaccgcaatttatacacacgagttagcaatcattttggtcattgaatgtgtctggcgctattgcta |
23360019 |
T |
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| Q |
122 |
tagtcgttgaacaaccaaaattacaaaaccaatctcagatgtgtctcttgttagtcagttt |
182 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
23360020 |
tagtcgttgaacaaccaaaattacaaaaccaatctcaaatgtgtctcttgttagtcagttt |
23360080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 143; E-Value: 2e-75
Query Start/End: Original strand, 22 - 182
Target Start/End: Original strand, 23364744 - 23364901
Alignment:
| Q |
22 |
tgtacaatatcaaagtttgcaccataataacaacaaccgcaatttatacacacgagttagcaatcattttggtcattgaatgtgtctggcgctattgcta |
121 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23364744 |
tgtacaatatcaaagtttgcaccataa---caacaaccgcaatttatacacacgagttagcaatcattttggtcattgaatgtgtctggcgctattgcta |
23364840 |
T |
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| Q |
122 |
tagtcgttgaacaaccaaaattacaaaaccaatctcagatgtgtctcttgttagtcagttt |
182 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
23364841 |
tagtcgttgaacaaccaaaattacaaaaccaatctcaaatgtgtctcttgttagtcagttt |
23364901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 143; E-Value: 2e-75
Query Start/End: Original strand, 22 - 182
Target Start/End: Original strand, 23695222 - 23695379
Alignment:
| Q |
22 |
tgtacaatatcaaagtttgcaccataataacaacaaccgcaatttatacacacgagttagcaatcattttggtcattgaatgtgtctggcgctattgcta |
121 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23695222 |
tgtacaatatcaaagtttgcaccataa---caacaaccgcaatttatacacacgagttagcaatcattttggtcattgaatgtgtctggcgctattgcta |
23695318 |
T |
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| Q |
122 |
tagtcgttgaacaaccaaaattacaaaaccaatctcagatgtgtctcttgttagtcagttt |
182 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
23695319 |
tagtcgttgaacaaccaaaattacaaaaccaatctcaaatgtgtctcttgttagtcagttt |
23695379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 143; E-Value: 2e-75
Query Start/End: Original strand, 22 - 182
Target Start/End: Original strand, 23713662 - 23713819
Alignment:
| Q |
22 |
tgtacaatatcaaagtttgcaccataataacaacaaccgcaatttatacacacgagttagcaatcattttggtcattgaatgtgtctggcgctattgcta |
121 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23713662 |
tgtacaatatcaaagtttgcaccataa---caacaaccgcaatttatacacacgagttagcaatcattttggtcattgaatgtgtctggcgctattgcta |
23713758 |
T |
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| Q |
122 |
tagtcgttgaacaaccaaaattacaaaaccaatctcagatgtgtctcttgttagtcagttt |
182 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
23713759 |
tagtcgttgaacaaccaaaattacaaaaccaatctcaaatgtgtctcttgttagtcagttt |
23713819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 143; E-Value: 2e-75
Query Start/End: Original strand, 22 - 182
Target Start/End: Original strand, 23732118 - 23732275
Alignment:
| Q |
22 |
tgtacaatatcaaagtttgcaccataataacaacaaccgcaatttatacacacgagttagcaatcattttggtcattgaatgtgtctggcgctattgcta |
121 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23732118 |
tgtacaatatcaaagtttgcaccataa---caacaaccgcaatttatacacacgagttagcaatcattttggtcattgaatgtgtctggcgctattgcta |
23732214 |
T |
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| Q |
122 |
tagtcgttgaacaaccaaaattacaaaaccaatctcagatgtgtctcttgttagtcagttt |
182 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
23732215 |
tagtcgttgaacaaccaaaattacaaaaccaatctcaaatgtgtctcttgttagtcagttt |
23732275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 143; E-Value: 2e-75
Query Start/End: Original strand, 22 - 182
Target Start/End: Original strand, 23750573 - 23750730
Alignment:
| Q |
22 |
tgtacaatatcaaagtttgcaccataataacaacaaccgcaatttatacacacgagttagcaatcattttggtcattgaatgtgtctggcgctattgcta |
121 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23750573 |
tgtacaatatcaaagtttgcaccataa---caacaaccgcaatttatacacacgagttagcaatcattttggtcattgaatgtgtctggcgctattgcta |
23750669 |
T |
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| Q |
122 |
tagtcgttgaacaaccaaaattacaaaaccaatctcagatgtgtctcttgttagtcagttt |
182 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
23750670 |
tagtcgttgaacaaccaaaattacaaaaccaatctcaaatgtgtctcttgttagtcagttt |
23750730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 26 - 147
Target Start/End: Complemental strand, 24113207 - 24113088
Alignment:
| Q |
26 |
caatatcaaagtttgcaccataataacaacaaccgcaatttatacacacgagttagcaatcattttggtcattgaatgtgtctggcgctattgctatagt |
125 |
Q |
| |
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|||| |||||||||||||||||| ||||||| |||||||| |||||||||||||||||||||||||||||||| |||||| |||||| ||||||| |
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| T |
24113207 |
caatgtcaaagtttgcaccataa---caacaactgcaatttaaacacacgagttagcaatcattttggtcattgattgtgtccaacgctatcactatagt |
24113111 |
T |
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| Q |
126 |
cgttgaac-aaccaaaattacaa |
147 |
Q |
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|||||||| |||||||| ||||| |
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| T |
24113110 |
cgttgaacaaaccaaaactacaa |
24113088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 52; E-Value: 4e-21
Query Start/End: Original strand, 26 - 179
Target Start/End: Complemental strand, 24105795 - 24105652
Alignment:
| Q |
26 |
caatatcaaagtttgcaccataataacaacaaccgcaatttatacacacgagttagcaatcattttggtcattgaatgtgtctggcgctattgctatagt |
125 |
Q |
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||||||||||||||||||||||| | ||| || ||||||| |||||||||||| ||||||||||||||||||| |||||||| | | |||| |
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| T |
24105795 |
caatatcaaagtttgcaccataa---ctacagccacaatttaaacacacgagttaacaatcattttggtcattgattgtgtctgacac--------tagt |
24105707 |
T |
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| Q |
126 |
cgttgaac-aaccaaaattacaaaaccaatctcagatgtgtctcttgttagtcag |
179 |
Q |
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|||||||| |||||||||||||||| | ||||| |||||||||| ||||||||| |
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| T |
24105706 |
cgttgaactaaccaaaattacaaaaacgttctcaaatgtgtctctcgttagtcag |
24105652 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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