View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5682-8 (Length: 164)
Name: Solexa-NF5682-8
Description: NF5682
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5682-8 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 139; Significance: 5e-73; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 139; E-Value: 5e-73
Query Start/End: Original strand, 22 - 164
Target Start/End: Original strand, 41805493 - 41805635
Alignment:
| Q |
22 |
cagagaagatgaatgtgacaacaattgttgttgaacttaagaagtgagttgaagagctagagaagttgatggaagagaaagaggagggtatgttgaactt |
121 |
Q |
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| T |
41805493 |
cagagaagatgaatgtgacaacaattgttgttgaacttaagaagagagttgaagagctagagaagttgatggaagagaaagaggagggtatgttgaactt |
41805592 |
T |
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| Q |
122 |
gggagaggaaaagagggaggccatcaggcagctttgtttgcgg |
164 |
Q |
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| T |
41805593 |
gggagaggaaaagagggaggccatcaggcagctttgtttgcgg |
41805635 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 88; E-Value: 1e-42
Query Start/End: Original strand, 22 - 161
Target Start/End: Original strand, 41799107 - 41799246
Alignment:
| Q |
22 |
cagagaagatgaatgtgacaacaattgttgttgaacttaagaagtgagttgaagagctagagaagttgatggaagagaaagaggagggtatgttgaactt |
121 |
Q |
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|||||||||||||||||||| ||| ||||||||||||||||||| ||||| |||||||||||||| |||| ||||||||||||| || || ||| | || |
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| T |
41799107 |
cagagaagatgaatgtgacagcaactgttgttgaacttaagaagacagttggagagctagagaagtcgatgaaagagaaagaggaaggcatattggattt |
41799206 |
T |
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| Q |
122 |
gggagaggaaaagagggaggccatcaggcagctttgtttg |
161 |
Q |
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| T |
41799207 |
gggagaggaaaagagggaggccatcaggcagctctgtttg |
41799246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 84; E-Value: 3e-40
Query Start/End: Original strand, 22 - 161
Target Start/End: Original strand, 41812323 - 41812462
Alignment:
| Q |
22 |
cagagaagatgaatgtgacaacaattgttgttgaacttaagaagtgagttgaagagctagagaagttgatggaagagaaagaggagggtatgttgaactt |
121 |
Q |
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|||||||||||||||||||| ||| ||||| ||||||||||||| ||||||||||||| |||||||||| ||||||||||||| || || ||| | || |
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| T |
41812323 |
cagagaagatgaatgtgacagcaactgttgatgaacttaagaagacagttgaagagctacagaagttgataaaagagaaagaggaaggaatattggattt |
41812422 |
T |
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| Q |
122 |
gggagaggaaaagagggaggccatcaggcagctttgtttg |
161 |
Q |
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| T |
41812423 |
gggagaggaaaagagggaggccatcaggcagctctgtttg |
41812462 |
T |
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