View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5682-9 (Length: 154)
Name: Solexa-NF5682-9
Description: NF5682
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5682-9 |
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Alignment Details
Target: chr8 (Bit Score: 125; Significance: 5e-65; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 125; E-Value: 5e-65
Query Start/End: Original strand, 8 - 146
Target Start/End: Complemental strand, 18221676 - 18221538
Alignment:
| Q |
8 |
cagttcaaataaaatgtgtgarccttgtaatggtaatataaaaaagctcactctttttcatttgattttaagtataacataaaaagctctctcttttatt |
107 |
Q |
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| T |
18221676 |
cagttcaaataaaatgtgtgaaccttgtaatggtaatataaaaaagctcactctttttcatttgattttaagtataacataaaaagatctctcttttatt |
18221577 |
T |
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| Q |
108 |
tcaaacaccttatgaagttctaaaaatgtcatctctgtt |
146 |
Q |
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| T |
18221576 |
tcaaacactttatgaagttctaaaaatgtcatctttgtt |
18221538 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 47; E-Value: 3e-18
Query Start/End: Original strand, 8 - 56
Target Start/End: Original strand, 5077246 - 5077294
Alignment:
| Q |
8 |
cagttcaaataaaatgtgtgarccttgtaatggtaatataaaaaagctc |
56 |
Q |
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| T |
5077246 |
cagttcaaataaaatgtgtgaaccttgtaatggtaatataaaaaagctc |
5077294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 52; Significance: 3e-21; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 52; E-Value: 3e-21
Query Start/End: Original strand, 8 - 74
Target Start/End: Complemental strand, 43013506 - 43013438
Alignment:
| Q |
8 |
cagttcaaataaaatgtgtgarccttgtaatggtaatataaaaaag--ctcactctttttcatttgatt |
74 |
Q |
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| T |
43013506 |
cagttcaaatcaaatgtgtgaaccttgtaatggtaatataaaaaagctctcactctttttcatttgatt |
43013438 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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