View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5684-10 (Length: 164)
Name: Solexa-NF5684-10
Description: NF5684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5684-10 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 150; Significance: 1e-79; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 150; E-Value: 1e-79
Query Start/End: Original strand, 2 - 164
Target Start/End: Complemental strand, 7153644 - 7153478
Alignment:
| Q |
2 |
agcagagatactggaaccaatgtgtgtatttgtgtgtatgagtacacatttaatgtataagaaacatgtgtgtttgctttttaattagaataatataaag |
101 |
Q |
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| T |
7153644 |
agcagagatactggaaccaatgtgtgtatttgtgtgtatgagtacacatttaatgtataagaaacatgtgtgtttgctttttaattagaataatataaag |
7153545 |
T |
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| Q |
102 |
tggtcatagatctcatcttcagaaaattgaaatgttagat----tttgttgaaggtgttatgagagc |
164 |
Q |
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| T |
7153544 |
tggtcatagatctcatcttcagaaaattgaaatgttagatttaatttgttgaaggtgttatgagagc |
7153478 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 13 - 164
Target Start/End: Complemental strand, 7159729 - 7159578
Alignment:
| Q |
13 |
tggaaccaatgtgtgtatttgtgtgtatg--agtacacatttaatgtataagaaacatgtgtgtttgctttttaattagaataatataaagtggtcatag |
110 |
Q |
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| T |
7159729 |
tggaaccaatatgtgtaattgtgtgtatattagtacacatttaatatataagaagcatgtgt--ttccttttt---tagaataatatgaggtggtcatgg |
7159635 |
T |
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| Q |
111 |
atctcatcttcagaaaattgaaatgtt---agattttgttgaaggtgttatgagagc |
164 |
Q |
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| T |
7159634 |
atctaaccttcatcaaattcaaatgttcttagattttgttgaaggtgttatgagagc |
7159578 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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