View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5684-11 (Length: 184)
Name: Solexa-NF5684-11
Description: NF5684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5684-11 |
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Alignment Details
Target: chr2 (Bit Score: 145; Significance: 1e-76; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 145; E-Value: 1e-76
Query Start/End: Original strand, 7 - 175
Target Start/End: Original strand, 27409436 - 27409604
Alignment:
| Q |
7 |
atcattctatagcatgtaaatatccttttgctatgataagaacctaatatgagaaactcacctcaattagtatatatcctcaagattttgatgaagtgtg |
106 |
Q |
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| T |
27409436 |
atcattctattgcatgtaaatatccttttgctatgattagaacctaatatgagaaactcacctcaattagtatatatcctcaagattttgatgaagtgtg |
27409535 |
T |
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| Q |
107 |
tgggttcatcaaagctctaaatcgtcattcttctgcccttagtacttcttcaactcgagctcttcatct |
175 |
Q |
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| T |
27409536 |
tgggttcaccaaagctctaaactgtcattcttctgcccttagtacttcttcaacacgagctcttcatct |
27409604 |
T |
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Target: chr4 (Bit Score: 141; Significance: 4e-74; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 7 - 175
Target Start/End: Complemental strand, 31979300 - 31979132
Alignment:
| Q |
7 |
atcattctatagcatgtaaatatccttttgctatgataagaacctaatatgagaaactcacctcaattagtatatatcctcaagattttgatgaagtgtg |
106 |
Q |
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| T |
31979300 |
atcattctattgcatgtaaatatccttttgctatgattagaacctaatatgagaaactcacatcaattagtatatatcctcaagattttgatgaagtgtg |
31979201 |
T |
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| Q |
107 |
tgggttcatcaaagctctaaatcgtcattcttctgcccttagtacttcttcaactcgagctcttcatct |
175 |
Q |
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| T |
31979200 |
tgggttcaccaaagctctaaactgtcattcttctgcccttagtacttcttcaacacgagctcttcatct |
31979132 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000006
Query Start/End: Original strand, 30 - 114
Target Start/End: Complemental strand, 52628928 - 52628843
Alignment:
| Q |
30 |
ccttttgctatgataagaacctaatatgagaaactcacctcaattagtatatatcc-tcaagattttgatgaagtgtgtgggttca |
114 |
Q |
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| T |
52628928 |
ccttttgctataattagaacctaatttaagaaattcacctcaattagtagagaaccttcgagattttgatcatgcgtgtgggttca |
52628843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 55; Significance: 7e-23; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 55; E-Value: 7e-23
Query Start/End: Original strand, 30 - 139
Target Start/End: Complemental strand, 32090687 - 32090578
Alignment:
| Q |
30 |
ccttttgctatgataagaacctaatatgagaaactcacctcaattagtatatatcc-tcaagattttgatgaagtgtgtgggttcatcaaagctctaaat |
128 |
Q |
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||||||||||| || |||||||||| ||||||| |||||||||||||||| |||| ||||| ||||||||||||||||||||||| | |||||||||| |
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| T |
32090687 |
ccttttgctataattagaacctaatttgagaaaatcacctcaattagtattgatccgtcaaggttttgatgaagtgtgtgggttca-ccaagctctaaac |
32090589 |
T |
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| Q |
129 |
cgtcattcttc |
139 |
Q |
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| T |
32090588 |
cttcattcttc |
32090578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 45 - 114
Target Start/End: Original strand, 35091903 - 35091973
Alignment:
| Q |
45 |
agaacctaatatgagaaactcacctcaattagtatatatcc-tcaagattttgatgaagtgtgtgggttca |
114 |
Q |
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|||||||||| ||||||||||||||||||||||| | |||| ||||||||||||||||||||||||||||| |
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| T |
35091903 |
agaacctaatttgagaaactcacctcaattagtagaaatccctcaagattttgatgaagtgtgtgggttca |
35091973 |
T |
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