View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: Solexa-NF5684-14 (Length: 143)

Name: Solexa-NF5684-14
Description: NF5684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] Solexa-NF5684-14
Solexa-NF5684-14
[»] chr6 (21 HSPs)
chr6 (5-105)||(4575000-4575100)
chr6 (5-105)||(4561196-4561296)
chr6 (6-105)||(4458287-4458386)
chr6 (5-83)||(3172455-3172533)
chr6 (16-105)||(4470495-4470584)
chr6 (4-105)||(4481385-4481486)
chr6 (4-86)||(4503724-4503806)
chr6 (23-105)||(4514479-4514561)
chr6 (33-105)||(4299189-4299261)
chr6 (46-105)||(4266547-4266606)
chr6 (14-105)||(4461815-4461906)
chr6 (23-86)||(4506568-4506631)
chr6 (104-143)||(4560887-4560926)
chr6 (45-86)||(4489735-4489776)
chr6 (48-105)||(4602484-4602541)
chr6 (58-105)||(4259547-4259594)
chr6 (23-93)||(4255979-4256049)
chr6 (45-83)||(4484163-4484201)
chr6 (36-76)||(4568765-4568805)
chr6 (104-143)||(4574689-4574729)
chr6 (48-103)||(4622834-4622889)
[»] chr8 (1 HSPs)
chr8 (5-105)||(20863183-20863283)
[»] chr5 (2 HSPs)
chr5 (20-105)||(24103691-24103776)
chr5 (58-107)||(24107065-24107114)
[»] scaffold0288 (1 HSPs)
scaffold0288 (14-103)||(3067-3156)
[»] scaffold0477 (1 HSPs)
scaffold0477 (58-105)||(4082-4129)
[»] chr7 (1 HSPs)
chr7 (58-105)||(3087112-3087159)


Alignment Details
Target: chr6 (Bit Score: 93; Significance: 1e-45; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 93; E-Value: 1e-45
Query Start/End: Original strand, 5 - 105
Target Start/End: Complemental strand, 4575100 - 4575000
Alignment:
Q  5 tgaagtgggagataaatgtcatagagcttctgctatggtattcaatacttctaatgaacttgagagtgatgttatgaatgctttctattctatgttccct 104  Q
    |||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4575100 tgaagtggcagataaatgtcatagagcttctggtatggtattcaatacttctaatgaacttgagagtgatgttatgaatgctttctattctatgttccct 4575001  T
Q  105 t 105  Q
    |    
T  4575000 t 4575000  T

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Target: chr6; HSP #2
Raw Score: 89; E-Value: 3e-43
Query Start/End: Original strand, 5 - 105
Target Start/End: Complemental strand, 4561296 - 4561196
Alignment:
Q  5 tgaagtgggagataaatgtcatagagcttctgctatggtattcaatacttctaatgaacttgagagtgatgttatgaatgctttctattctatgttccct 104  Q
    |||||||| ||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4561296 tgaagtggcagataaatgtcttagagcttctggtatggtattcaatacttctaatgaacttgagagtgatgttatgaatgctttctattctatgttccct 4561197  T
Q  105 t 105  Q
    |    
T  4561196 t 4561196  T

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Target: chr6; HSP #3
Raw Score: 56; E-Value: 1e-23
Query Start/End: Original strand, 6 - 105
Target Start/End: Complemental strand, 4458386 - 4458287
Alignment:
Q  6 gaagtgggagataaatgtcatagagcttctgctatggtattcaatacttctaatgaacttgagagtgatgttatgaatgctttctattctatgttccctt 105  Q
    ||||||| ||||| |||||||||||| ||| |||| ||  ||||||||||| |||||||||||||||||||||||||| || |||| |||||||||||||    
T  4458386 gaagtggcagatagatgtcatagagcctcttctattgttatcaatacttcttatgaacttgagagtgatgttatgaatactctctactctatgttccctt 4458287  T

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Target: chr6; HSP #4
Raw Score: 55; E-Value: 6e-23
Query Start/End: Original strand, 5 - 83
Target Start/End: Complemental strand, 3172533 - 3172455
Alignment:
Q  5 tgaagtgggagataaatgtcatagagcttctgctatggtattcaatacttctaatgaacttgagagtgatgttatgaat 83  Q
    |||||| |||||||||||||| | |||||||||||| || ||||| |||||||||||||||||||||||||||||||||    
T  3172533 tgaagtaggagataaatgtcacaaagcttctgctattgttttcaacacttctaatgaacttgagagtgatgttatgaat 3172455  T

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Target: chr6; HSP #5
Raw Score: 54; E-Value: 2e-22
Query Start/End: Original strand, 16 - 105
Target Start/End: Complemental strand, 4470584 - 4470495
Alignment:
Q  16 ataaatgtcatagagcttctgctatggtattcaatacttctaatgaacttgagagtgatgttatgaatgctttctattctatgttccctt 105  Q
    |||||||||| |||||||||||||| || || |||||||||||||||||||| ||||||||||||||||   |||||||||| |||||||    
T  4470584 ataaatgtcaaagagcttctgctattgttttgaatacttctaatgaacttgaaagtgatgttatgaatgaactctattctatattccctt 4470495  T

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Target: chr6; HSP #6
Raw Score: 54; E-Value: 2e-22
Query Start/End: Original strand, 4 - 105
Target Start/End: Complemental strand, 4481486 - 4481385
Alignment:
Q  4 atgaagtgggagataaatgtcatagagcttctgctatggtattcaatacttctaatgaacttgagagtgatgttatgaatgctttctattctatgttccc 103  Q
    ||||||||  |||||||||||| ||||| |||||| | ||  ||||||||||| |||||||||||||||||||||||||| || |||||||||| |||||    
T  4481486 atgaagtgacagataaatgtcaaagagcatctgcttttgttatcaatacttcttatgaacttgagagtgatgttatgaattctctctattctatattccc 4481387  T
Q  104 tt 105  Q
    ||    
T  4481386 tt 4481385  T

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Target: chr6; HSP #7
Raw Score: 51; E-Value: 1e-20
Query Start/End: Original strand, 4 - 86
Target Start/End: Original strand, 4503724 - 4503806
Alignment:
Q  4 atgaagtgggagataaatgtcatagagcttctgctatggtattcaatacttctaatgaacttgagagtgatgttatgaatgct 86  Q
    ||||||||| |||||||||||| ||||| || || || || ||||||||||||||||||||||||||||||| ||||||||||    
T  4503724 atgaagtggcagataaatgtcaaagagcctcagccattgttttcaatacttctaatgaacttgagagtgatgctatgaatgct 4503806  T

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Target: chr6; HSP #8
Raw Score: 51; E-Value: 1e-20
Query Start/End: Original strand, 23 - 105
Target Start/End: Original strand, 4514479 - 4514561
Alignment:
Q  23 tcatagagcttctgctatggtattcaatacttctaatgaacttgagagtgatgttatgaatgctttctattctatgttccctt 105  Q
    ||||||||||||||||||  | || |||||||||||||| |||||||||||||||||||||||| | ||||||||| ||||||    
T  4514479 tcatagagcttctgctatttttttaaatacttctaatgatcttgagagtgatgttatgaatgctctttattctatgctccctt 4514561  T

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Target: chr6; HSP #9
Raw Score: 45; E-Value: 5e-17
Query Start/End: Original strand, 33 - 105
Target Start/End: Original strand, 4299189 - 4299261
Alignment:
Q  33 tctgctatggtattcaatacttctaatgaacttgagagtgatgttatgaatgctttctattctatgttccctt 105  Q
    |||||||| || || ||||||| | ||||||||||||||||||| ||||||||| ||||||||||||||||||    
T  4299189 tctgctattgtttttaatacttatgatgaacttgagagtgatgtaatgaatgctctctattctatgttccctt 4299261  T

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Target: chr6; HSP #10
Raw Score: 44; E-Value: 2e-16
Query Start/End: Original strand, 46 - 105
Target Start/End: Original strand, 4266547 - 4266606
Alignment:
Q  46 tcaatacttctaatgaacttgagagtgatgttatgaatgctttctattctatgttccctt 105  Q
    ||||||||||  ||||||||||||||||||||||||||||| |||| |||||||||||||    
T  4266547 tcaatacttcatatgaacttgagagtgatgttatgaatgctctctactctatgttccctt 4266606  T

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Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 14 - 105
Target Start/End: Complemental strand, 4461906 - 4461815
Alignment:
Q  14 agataaatgtcatagagcttctgctatggtattcaatacttctaatgaacttgagagtgatgttatgaatgctttctattctatgttccctt 105  Q
    |||||||||||| |||||||||||| |  | || ||||||||||||||||| || |||||| |||||||||   |||||| ||| |||||||    
T  4461906 agataaatgtcacagagcttctgctgttattttgaatacttctaatgaactcgaaagtgatattatgaatgaactctattttatattccctt 4461815  T

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Target: chr6; HSP #12
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 23 - 86
Target Start/End: Complemental strand, 4506631 - 4506568
Alignment:
Q  23 tcatagagcttctgctatggtattcaatacttctaatgaacttgagagtgatgttatgaatgct 86  Q
    ||||||||| ||| |||| ||  |||||||||||||||||||||||||| ||||| ||||||||    
T  4506631 tcatagagcctcttctattgttctcaatacttctaatgaacttgagagtaatgttctgaatgct 4506568  T

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Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 104 - 143
Target Start/End: Complemental strand, 4560926 - 4560887
Alignment:
Q  104 ttttctcatctgatttttgaaagaaatttaagatagagga 143  Q
    ||||||||||||||||||||||||||||| ||||||||||    
T  4560926 ttttctcatctgatttttgaaagaaatttcagatagagga 4560887  T

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Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 45 - 86
Target Start/End: Original strand, 4489735 - 4489776
Alignment:
Q  45 ttcaatacttctaatgaacttgagagtgatgttatgaatgct 86  Q
    ||||||||||||||||||||||||||||||| ||| ||||||    
T  4489735 ttcaatacttctaatgaacttgagagtgatgctatcaatgct 4489776  T

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Target: chr6; HSP #15
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 48 - 105
Target Start/End: Complemental strand, 4602541 - 4602484
Alignment:
Q  48 aatacttctaatgaacttgagagtgatgttatgaatgctttctattctatgttccctt 105  Q
    |||||||  |||||||||||||||||||| ||||||||  | ||||||||||||||||    
T  4602541 aatacttacaatgaacttgagagtgatgtaatgaatgcactatattctatgttccctt 4602484  T

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Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 58 - 105
Target Start/End: Original strand, 4259547 - 4259594
Alignment:
Q  58 atgaacttgagagtgatgttatgaatgctttctattctatgttccctt 105  Q
    ||||||||||||||||||| |||||||   ||||||||||||||||||    
T  4259547 atgaacttgagagtgatgtaatgaatgtgctctattctatgttccctt 4259594  T

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Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 23 - 93
Target Start/End: Original strand, 4255979 - 4256049
Alignment:
Q  23 tcatagagcttctgctatggtattcaatacttctaatgaacttgagagtgatgttatgaatgctttctatt 93  Q
    ||||||||| |||||||| || || || |||| ||||||||||||||| |||||  |||||||| ||||||    
T  4255979 tcatagagcctctgctattgtttttaacacttataatgaacttgagagcgatgtattgaatgctctctatt 4256049  T

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Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 45 - 83
Target Start/End: Original strand, 4484163 - 4484201
Alignment:
Q  45 ttcaatacttctaatgaacttgagagtgatgttatgaat 83  Q
    |||||||||| ||||||||| ||||||||||||||||||    
T  4484163 ttcaatacttttaatgaactagagagtgatgttatgaat 4484201  T

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Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 36 - 76
Target Start/End: Complemental strand, 4568805 - 4568765
Alignment:
Q  36 gctatggtattcaatacttctaatgaacttgagagtgatgt 76  Q
    ||||| || |||||||||| |||||||||||||||||||||    
T  4568805 gctattgttttcaatacttataatgaacttgagagtgatgt 4568765  T

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Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 104 - 143
Target Start/End: Complemental strand, 4574729 - 4574689
Alignment:
Q  104 ttttctcatctgattttt-gaaagaaatttaagatagagga 143  Q
    |||||||||||||||||| ||||||||||| ||||||||||    
T  4574729 ttttctcatctgattttttgaaagaaatttcagatagagga 4574689  T

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Target: chr6; HSP #21
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 48 - 103
Target Start/End: Complemental strand, 4622889 - 4622834
Alignment:
Q  48 aatacttctaatgaacttgagagtgatgttatgaatgctttctattctatgttccc 103  Q
    ||||||| |||||||||||||| |||||  ||||||||  ||||||| ||||||||    
T  4622889 aatacttataatgaacttgagactgatgcgatgaatgcgctctattcaatgttccc 4622834  T

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Target: chr8 (Bit Score: 49; Significance: 2e-19; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 2e-19
Query Start/End: Original strand, 5 - 105
Target Start/End: Original strand, 20863183 - 20863283
Alignment:
Q  5 tgaagtgggagataaatgtcatagagcttctgctatggtattcaatacttctaatgaacttgagagtgatgttatgaatgctttctattctatgttccct 104  Q
    |||||| | ||||| || ||| ||||| |||||||| || ||||||||||  ||||| |||||||||||||||||||||| | |||||||||||||||||    
T  20863183 tgaagtagtagatagatttcacagagcctctgctattgttttcaatactttcaatgagcttgagagtgatgttatgaatgttctctattctatgttccct 20863282  T
Q  105 t 105  Q
    |    
T  20863283 t 20863283  T

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Target: chr5 (Bit Score: 46; Significance: 1e-17; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 1e-17
Query Start/End: Original strand, 20 - 105
Target Start/End: Complemental strand, 24103776 - 24103691
Alignment:
Q  20 atgtcatagagcttctgctatggtattcaatacttctaatgaacttgagagtgatgttatgaatgctttctattctatgttccctt 105  Q
    |||||| ||||| ||| |||| ||  ||||||||||  ||||||||||||||||||||||||||||| |||| |||||||||||||    
T  24103776 atgtcacagagcctcttctattgttatcaatacttcatatgaacttgagagtgatgttatgaatgctctctactctatgttccctt 24103691  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 58 - 107
Target Start/End: Complemental strand, 24107114 - 24107065
Alignment:
Q  58 atgaacttgagagtgatgttatgaatgctttctattctatgttccctttt 107  Q
    ||||||||||||||||||| |||||| |  ||||||||||||||||||||    
T  24107114 atgaacttgagagtgatgtaatgaatacgctctattctatgttccctttt 24107065  T

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Target: scaffold0288 (Bit Score: 30; Significance: 0.00000005; HSPs: 1)
Name: scaffold0288
Description:

Target: scaffold0288; HSP #1
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 14 - 103
Target Start/End: Original strand, 3067 - 3156
Alignment:
Q  14 agataaatgtcatagagcttctgctatggtattcaatacttctaatgaacttgagagtgatgttatgaatgctttctattctatgttccc 103  Q
    |||| ||| ||| ||||||||||| || || || || |||| |||||||||||||||||||||  |||||||  || | |||||||||||    
T  3067 agatcaatttcacagagcttctgcaattgtttttaacacttataatgaacttgagagtgatgtactgaatgcgctccactctatgttccc 3156  T

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Target: scaffold0477 (Bit Score: 28; Significance: 0.0000007; HSPs: 1)
Name: scaffold0477
Description:

Target: scaffold0477; HSP #1
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 58 - 105
Target Start/End: Original strand, 4082 - 4129
Alignment:
Q  58 atgaacttgagagtgatgttatgaatgctttctattctatgttccctt 105  Q
    ||||||||||||| | |||  |||||||| ||||||||||||||||||    
T  4082 atgaacttgagagcggtgtattgaatgctctctattctatgttccctt 4129  T

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Target: chr7 (Bit Score: 28; Significance: 0.0000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 58 - 105
Target Start/End: Complemental strand, 3087159 - 3087112
Alignment:
Q  58 atgaacttgagagtgatgttatgaatgctttctattctatgttccctt 105  Q
    ||||||||||||||||||| ||||||||  | |||||| |||||||||    
T  3087159 atgaacttgagagtgatgtaatgaatgcgctatattctgtgttccctt 3087112  T

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