View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5684-15 (Length: 113)
Name: Solexa-NF5684-15
Description: NF5684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5684-15 |
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Alignment Details
Target: chr5 (Bit Score: 104; Significance: 2e-52; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 104; E-Value: 2e-52
Query Start/End: Original strand, 2 - 109
Target Start/End: Complemental strand, 2361348 - 2361241
Alignment:
| Q |
2 |
gcagagaccatggggaaaatgggcggcggagataagagacccggcgcgtggagtgcgtgtgtggcttggtacatttcaaacgactgaagaagctgctatt |
101 |
Q |
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| T |
2361348 |
gcagagaccatggggaaaatgggcggcggagataagagacccggcgcgtggagtgcgtgtgtggcttggtacatttcaaacggctgaagaagctgctatt |
2361249 |
T |
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| Q |
102 |
gtgtacga |
109 |
Q |
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| T |
2361248 |
gtgtacga |
2361241 |
T |
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Target: chr8 (Bit Score: 37; Significance: 0.000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000002
Query Start/End: Original strand, 3 - 43
Target Start/End: Original strand, 41747958 - 41747998
Alignment:
| Q |
3 |
cagagaccatggggaaaatgggcggcggagataagagaccc |
43 |
Q |
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| T |
41747958 |
cagagaccttggggaaaatgggcggcggagataagagaccc |
41747998 |
T |
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Target: chr3 (Bit Score: 30; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 40
Target Start/End: Complemental strand, 43490190 - 43490153
Alignment:
| Q |
3 |
cagagaccatggggaaaatgggcggcggagataagaga |
40 |
Q |
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| T |
43490190 |
cagagaccatggggaaaatgggcagcagagataagaga |
43490153 |
T |
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