View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5684-17 (Length: 211)
Name: Solexa-NF5684-17
Description: NF5684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5684-17 |
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Alignment Details
Target: chr1 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 7 - 196
Target Start/End: Complemental strand, 35268836 - 35268647
Alignment:
| Q |
7 |
agaagaatttctttacctttttagtatttcttatatggaatacatcacagcttcaatgttgatattccttataagaattctattggatttgtggagtcta |
106 |
Q |
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| T |
35268836 |
agaagaatttctttacctttttagtatttcttatatggaatacatcacagcttcaatgttgatattccttataagaattctattggatttgtggagtcta |
35268737 |
T |
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| Q |
107 |
caaccgttgtttgttgttattcttctctcaagagtacattcactgttgatgagctaagataccagttttggaatttctgtggtttctttt |
196 |
Q |
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| T |
35268736 |
caaccgttgtttgttgttattcttctctcaagagtacattcactgttgatgagctaagataccagttttggaatttctgtggtttctttt |
35268647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 7 - 103
Target Start/End: Complemental strand, 18704423 - 18704327
Alignment:
| Q |
7 |
agaagaatttctttacctttttagtatttcttatatggaatacatcacagcttcaatgttgatattccttataagaattctattggatttgtggagt |
103 |
Q |
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| T |
18704423 |
agaagaatttctttacctttttagcatttcttatatggaatacatcacagcttcaatgttgatattccttataagaattctattggatttgtggagt |
18704327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 9 - 93
Target Start/End: Complemental strand, 27441891 - 27441806
Alignment:
| Q |
9 |
aagaatttctttacctttttagtatttcttatatgg-aatacatcacagcttcaatgttgatattccttataagaattctattgga |
93 |
Q |
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|||| |||||||| |||| ||||||||||||||||| ||||||| | ||||| | ||||| |||| |||||||||||||||||||| |
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| T |
27441891 |
aagattttctttagctttctagtatttcttatatggaaatacataaaagctttattgttggtatttcttataagaattctattgga |
27441806 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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