View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5684-18 (Length: 188)
Name: Solexa-NF5684-18
Description: NF5684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5684-18 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 154; Significance: 6e-82; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 154; E-Value: 6e-82
Query Start/End: Original strand, 8 - 188
Target Start/End: Complemental strand, 42968482 - 42968297
Alignment:
| Q |
8 |
gttatgtgcttttttcaacagttggagatggttgcatgacagaaaagaacagctttattagcagatatgctcaatcatccatgcttgggttgggtgggtg |
107 |
Q |
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| T |
42968482 |
gttatgtgcttttttcaacagttggagatggttgcatgacaggaaagaacagctttattagcagatatgctcaaccatccatgcttgggttgggtgggtg |
42968383 |
T |
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| Q |
108 |
ctccatggattgt-----gacaattcactagttccacagtgtatggtattggacataaaactgaatgtctcaaggcctttgcttct |
188 |
Q |
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| T |
42968382 |
ctccatggattgtgacatgacaattcactagttccacagtgtatggtattggacataaaactgaatgtctcaaggcctttgtttct |
42968297 |
T |
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