View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5684-21 (Length: 143)
Name: Solexa-NF5684-21
Description: NF5684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5684-21 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 141; Significance: 3e-74; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 141; E-Value: 3e-74
Query Start/End: Original strand, 3 - 143
Target Start/End: Complemental strand, 1479129 - 1478989
Alignment:
| Q |
3 |
catagggagaaataaattattatacattaataacattaaaatgtgcacatctcaaatctcaaagaagaatcataaaatacataaacactcaaagagtaga |
102 |
Q |
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| T |
1479129 |
catagggagaaataaattattatacattaataacattaaaatgtgcacatctcaaatctcaaagaagaatcataaaatacataaacactcaaagagtaga |
1479030 |
T |
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| Q |
103 |
gaagttagatcaacattccatctaccctgtaaaaggaaaat |
143 |
Q |
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| T |
1479029 |
gaagttagatcaacattccatctaccctgtaaaaggaaaat |
1478989 |
T |
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