View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: Solexa-NF5684-26 (Length: 151)

Name: Solexa-NF5684-26
Description: NF5684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] Solexa-NF5684-26
Solexa-NF5684-26
[»] chr4 (6 HSPs)
chr4 (7-151)||(3438400-3438544)
chr4 (40-145)||(553606-553711)
chr4 (81-145)||(6006455-6006519)
chr4 (103-147)||(53761702-53761746)
chr4 (29-64)||(1548282-1548317)
chr4 (12-147)||(8186930-8187065)
[»] chr3 (3 HSPs)
chr3 (11-64)||(51764281-51764334)
chr3 (103-147)||(13470662-13470706)
chr3 (8-147)||(514563-514702)
[»] chr6 (2 HSPs)
chr6 (28-148)||(9411476-9411596)
chr6 (103-150)||(6402982-6403029)
[»] chr1 (2 HSPs)
chr1 (26-64)||(9581276-9581314)
chr1 (26-64)||(9586844-9586882)
[»] scaffold0014 (1 HSPs)
scaffold0014 (108-145)||(88943-88980)
[»] chr2 (1 HSPs)
chr2 (8-69)||(32785610-32785671)
[»] scaffold0807 (1 HSPs)
scaffold0807 (103-147)||(1394-1438)
[»] chr8 (1 HSPs)
chr8 (29-69)||(18315129-18315169)
[»] chr7 (1 HSPs)
chr7 (103-147)||(10614718-10614762)
[»] chr5 (1 HSPs)
chr5 (33-69)||(41901398-41901434)


Alignment Details
Target: chr4 (Bit Score: 121; Significance: 2e-62; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 121; E-Value: 2e-62
Query Start/End: Original strand, 7 - 151
Target Start/End: Original strand, 3438400 - 3438544
Alignment:
Q  7 gagagatgaaagcctcgtgatgttttcttctattttccccaatttgcagctgcttgatgtgagagaatgcgaccacatatctgactaaggtgttattcaa 106  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||    
T  3438400 gagagatgaaagcctcttgatgttttcttctattttccccaatttgcagctgcttgatgtgagagaatgcgactacatatctgacgaaggtgttattcaa 3438499  T
Q  107 cttttaaggagacgttgtaagattagccatttgaacttagctggt 151  Q
     ||||||||||| ||||||||||||| ||||||||||||||||||    
T  3438500 gttttaaggagatgttgtaagattagacatttgaacttagctggt 3438544  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 40 - 145
Target Start/End: Complemental strand, 553711 - 553606
Alignment:
Q  40 tttccccaatttgcagctgcttgatgtgagagaatgcgaccacatatctgactaaggtgttattcaacttttaaggagacgttgtaagattagccatttg 139  Q
    |||||||||||||||| |||||||| ||||| | | | || |  |||||||  ||| |||| ||||  ||||||||| | ||||||| ||||| ||||||    
T  553711 tttccccaatttgcagatgcttgatttgagatattcctacgatgtatctgaagaagctgttgttcatgttttaaggacatgttgtaacattagacatttg 553612  T
Q  140 aactta 145  Q
    ||||||    
T  553611 aactta 553606  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 81 - 145
Target Start/End: Complemental strand, 6006519 - 6006455
Alignment:
Q  81 acatatctgactaaggtgttattcaacttttaaggagacgttgtaagattagccatttgaactta 145  Q
    ||||||||||  ||||||||  |||| ||||||||| | || |||||||||| ||||||||||||    
T  6006519 acatatctgatgaaggtgttgctcaagttttaaggaaatgtagtaagattagacatttgaactta 6006455  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 103 - 147
Target Start/End: Original strand, 53761702 - 53761746
Alignment:
Q  103 tcaacttttaaggagacgttgtaagattagccatttgaacttagc 147  Q
    |||| ||||||||||| ||||||| ||||| ||||||||||||||    
T  53761702 tcaagttttaaggagatgttgtaacattaggcatttgaacttagc 53761746  T

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Target: chr4; HSP #5
Raw Score: 28; E-Value: 0.0000008
Query Start/End: Original strand, 29 - 64
Target Start/End: Original strand, 1548282 - 1548317
Alignment:
Q  29 ttttcttctattttccccaatttgcagctgcttgat 64  Q
    |||||||| ||||||||||||||||| |||||||||    
T  1548282 ttttcttcgattttccccaatttgcaactgcttgat 1548317  T

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Target: chr4; HSP #6
Raw Score: 28; E-Value: 0.0000008
Query Start/End: Original strand, 12 - 147
Target Start/End: Original strand, 8186930 - 8187065
Alignment:
Q  12 atgaaagcctcgtgatgttttcttctattttccccaatttgcagctgcttgatgtgagagaatgcgaccacatatctgactaaggtgttattcaactttt 111  Q
    |||||| |||||  ||||| |||||  | ||||||||||||||| |||||||| ||||  | ||| |  ||||||||||  ||||| ||  |||| ||||    
T  8186930 atgaaaacctcgaaatgttatcttccttattccccaatttgcagttgcttgatttgagtcattgctatgacatatctgaagaaggtatttgtcaagtttt 8187029  T
Q  112 aaggagacgttgtaagattagccatttgaacttagc 147  Q
     | |||| ||||| |||||||  |||||||||||||    
T  8187030 gaagagatgttgtgagattagggatttgaacttagc 8187065  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 11 - 64
Target Start/End: Original strand, 51764281 - 51764334
Alignment:
Q  11 gatgaaagcctcgtgatgttttcttctattttccccaatttgcagctgcttgat 64  Q
    ||||||||| || | |||||| |||| |||||||||||||||||||||||||||    
T  51764281 gatgaaagcatcataatgtttgcttccattttccccaatttgcagctgcttgat 51764334  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 103 - 147
Target Start/End: Original strand, 13470662 - 13470706
Alignment:
Q  103 tcaacttttaaggagacgttgtaagattagccatttgaacttagc 147  Q
    |||| ||||||||| | ||||||||||||| ||||||||||||||    
T  13470662 tcaagttttaaggatatgttgtaagattaggcatttgaacttagc 13470706  T

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Target: chr3; HSP #3
Raw Score: 28; E-Value: 0.0000008
Query Start/End: Original strand, 8 - 147
Target Start/End: Original strand, 514563 - 514702
Alignment:
Q  8 agagatgaaagcctcgtgatgttttcttctattttccccaatttgcagctgcttgatgtgagagaatgcgaccacatatctgactaaggtgttattcaac 107  Q
    |||||||||| |||  | |||||| |||| |||||||| |||||||||||  ||||| ||||  | || ||  ||||||||||| || || |   ||||     
T  514563 agagatgaaaaccttataatgtttgcttcaattttcccgaatttgcagctaattgatttgagctattgtgataacatatctgacaaaagtatctgtcaag 514662  T
Q  108 ttttaaggagacgttgtaagattagccatttgaacttagc 147  Q
    |||||| |||| | | ||||||||| ||||||||||||||    
T  514663 ttttaaagagatggtctaagattaggcatttgaacttagc 514702  T

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Target: chr6 (Bit Score: 33; Significance: 0.0000000008; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.0000000008
Query Start/End: Original strand, 28 - 148
Target Start/End: Complemental strand, 9411596 - 9411476
Alignment:
Q  28 gttttcttctattttccccaatttgcagctgcttgatgtgagagaatgcgaccacatatctgactaaggtgttattcaacttttaaggagacgttgtaag 127  Q
    |||| |||| ||||||||||||||||||||||||||| |||| | |||     |||||||| || ||||| || | ||  ||||||||||| || ||||     
T  9411596 gtttgcttccattttccccaatttgcagctgcttgatttgagcggatgttgtaacatatctaacgaaggtattttgcaggttttaaggagatgtggtaac 9411497  T
Q  128 attagccatttgaacttagct 148  Q
    ||||| ||||||||| |||||    
T  9411496 attagacatttgaacctagct 9411476  T

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Target: chr6; HSP #2
Raw Score: 28; E-Value: 0.0000008
Query Start/End: Original strand, 103 - 150
Target Start/End: Complemental strand, 6403029 - 6402982
Alignment:
Q  103 tcaacttttaaggagacgttgtaagattagccatttgaacttagctgg 150  Q
    |||| ||||||||||| ||||||| ||||| |||||||||||| ||||    
T  6403029 tcaagttttaaggagatgttgtaacattaggcatttgaacttaactgg 6402982  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 26 - 64
Target Start/End: Complemental strand, 9581314 - 9581276
Alignment:
Q  26 atgttttcttctattttccccaatttgcagctgcttgat 64  Q
    |||||| |||| |||||||||||||||||||||||||||    
T  9581314 atgtttgcttcaattttccccaatttgcagctgcttgat 9581276  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 26 - 64
Target Start/End: Complemental strand, 9586882 - 9586844
Alignment:
Q  26 atgttttcttctattttccccaatttgcagctgcttgat 64  Q
    |||||| |||| |||||||||||||||||||||||||||    
T  9586882 atgtttgcttcaattttccccaatttgcagctgcttgat 9586844  T

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Target: scaffold0014 (Bit Score: 30; Significance: 0.00000005; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 108 - 145
Target Start/End: Complemental strand, 88980 - 88943
Alignment:
Q  108 ttttaaggagacgttgtaagattagccatttgaactta 145  Q
    ||||||||||| ||||||||||||| ||||||||||||    
T  88980 ttttaaggagatgttgtaagattagacatttgaactta 88943  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 8 - 69
Target Start/End: Original strand, 32785610 - 32785671
Alignment:
Q  8 agagatgaaagcctcgtgatgttttcttctattttccccaatttgcagctgcttgatgtgag 69  Q
    |||||||||||| ||  ||||||||||||||||||  |||||||||| || |||||| ||||    
T  32785610 agagatgaaagcatcaggatgttttcttctattttttccaatttgcaactacttgatttgag 32785671  T

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Target: scaffold0807 (Bit Score: 29; Significance: 0.0000002; HSPs: 1)
Name: scaffold0807
Description:

Target: scaffold0807; HSP #1
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 103 - 147
Target Start/End: Original strand, 1394 - 1438
Alignment:
Q  103 tcaacttttaaggagacgttgtaagattagccatttgaacttagc 147  Q
    |||| ||||||||||| ||| ||||||||| ||||||||||||||    
T  1394 tcaagttttaaggagatgttataagattagacatttgaacttagc 1438  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 29 - 69
Target Start/End: Original strand, 18315129 - 18315169
Alignment:
Q  29 ttttcttctattttccccaatttgcagctgcttgatgtgag 69  Q
    |||||||| |||||||||||||||||| |||||||| ||||    
T  18315129 ttttcttccattttccccaatttgcagttgcttgatttgag 18315169  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 103 - 147
Target Start/End: Complemental strand, 10614762 - 10614718
Alignment:
Q  103 tcaacttttaaggagacgttgtaagattagccatttgaacttagc 147  Q
    |||| ||||||||| | ||||||||||||| ||||||||||||||    
T  10614762 tcaagttttaaggatatgttgtaagattaggcatttgaacttagc 10614718  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 33 - 69
Target Start/End: Original strand, 41901398 - 41901434
Alignment:
Q  33 cttctattttccccaatttgcagctgcttgatgtgag 69  Q
    |||| ||||||||||||||||||||||||||| ||||    
T  41901398 cttccattttccccaatttgcagctgcttgatttgag 41901434  T

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