View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5684-3 (Length: 95)
Name: Solexa-NF5684-3
Description: NF5684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5684-3 |
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Alignment Details
Target: chr7 (Bit Score: 59; Significance: 1e-25; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 59; E-Value: 1e-25
Query Start/End: Original strand, 25 - 87
Target Start/End: Original strand, 26297757 - 26297819
Alignment:
| Q |
25 |
ttaaaactacaatcggaatcaagccatggagtgtcggaccagtttcagcctgggctaacaagg |
87 |
Q |
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| T |
26297757 |
ttaaaactacaatcggaatcaagtcatggagtgtcggaccagtttcagcctgggctaacaagg |
26297819 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 54; E-Value: 1e-22
Query Start/End: Original strand, 26 - 87
Target Start/End: Original strand, 26242710 - 26242771
Alignment:
| Q |
26 |
taaaactacaatcggaatcaagccatggagtgtcggaccagtttcagcctgggctaacaagg |
87 |
Q |
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| T |
26242710 |
taaaactacaatcggaatcaaatcatggagtgtcggaccagtttcagcctgggctaacaagg |
26242771 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000002
Query Start/End: Original strand, 26 - 87
Target Start/End: Original strand, 26251158 - 26251219
Alignment:
| Q |
26 |
taaaactacaatcggaatcaagccatggagtgtcggaccagtttcagcctgggctaacaagg |
87 |
Q |
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| T |
26251158 |
taaaagtacaattggaatcaaatcatggagtgtcggaccagtttctgcctgggctaacaagg |
26251219 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000003
Query Start/End: Original strand, 26 - 87
Target Start/End: Original strand, 44903563 - 44903624
Alignment:
| Q |
26 |
taaaactacaatcggaatcaagccatggagtgtcggaccagtttcagcctgggctaacaagg |
87 |
Q |
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|||||||||||| || || ||| | |||||||| |||||||||||| | ||||||||||||| |
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| T |
44903563 |
taaaactacaatggggattaagtcttggagtgtaggaccagtttcaacttgggctaacaagg |
44903624 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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