View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: Solexa-NF5684-31 (Length: 133)

Name: Solexa-NF5684-31
Description: NF5684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] Solexa-NF5684-31
Solexa-NF5684-31
[»] chr2 (1 HSPs)
chr2 (8-133)||(39662119-39662244)
[»] chr4 (1 HSPs)
chr4 (89-133)||(22596164-22596208)


Alignment Details
Target: chr2 (Bit Score: 126; Significance: 2e-65; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 126; E-Value: 2e-65
Query Start/End: Original strand, 8 - 133
Target Start/End: Complemental strand, 39662244 - 39662119
Alignment:
Q  8 cttctctcatatttctccttataaaaaagccagctcgtgcaattctcttacccttttgttttgctctctcgctcgtaatcgaacaatctcatcctcacag 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39662244 cttctctcatatttctccttataaaaaagccagctcgtgcaattctcttacccttttgttttgctctctcgctcgtaatcgaacaatctcatcctcacag 39662145  T
Q  108 tttcgtattcttcccgatctcaccac 133  Q
    ||||||||||||||||||||||||||    
T  39662144 tttcgtattcttcccgatctcaccac 39662119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 89 - 133
Target Start/End: Original strand, 22596164 - 22596208
Alignment:
Q  89 aacaatctcatcctcacagtttcgtattcttcccgatctcaccac 133  Q
    ||||||||| ||||||||||||| | |||||| ||||||||||||    
T  22596164 aacaatctcctcctcacagtttcattttcttctcgatctcaccac 22596208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University