View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: Solexa-NF5684-41 (Length: 96)

Name: Solexa-NF5684-41
Description: NF5684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] Solexa-NF5684-41
Solexa-NF5684-41
[»] chr4 (7 HSPs)
chr4 (8-94)||(25164525-25164611)
chr4 (8-94)||(45995949-45996034)
chr4 (8-94)||(37605745-37605831)
chr4 (8-94)||(55281250-55281336)
chr4 (8-92)||(43749134-43749220)
chr4 (8-94)||(17044045-17044130)
chr4 (8-56)||(3287126-3287174)
[»] chr6 (4 HSPs)
chr6 (8-94)||(9045875-9045960)
chr6 (8-94)||(14314040-14314126)
chr6 (8-94)||(34792705-34792791)
chr6 (8-96)||(1244608-1244696)
[»] chr5 (3 HSPs)
chr5 (8-94)||(13988289-13988375)
chr5 (8-94)||(36890419-36890504)
chr5 (8-94)||(11247234-11247320)
[»] chr3 (6 HSPs)
chr3 (8-94)||(12224057-12224143)
chr3 (8-94)||(38247840-38247926)
chr3 (8-57)||(9271152-9271201)
chr3 (8-94)||(50989245-50989331)
chr3 (8-94)||(51092377-51092463)
chr3 (8-94)||(48034862-48034949)
[»] chr8 (4 HSPs)
chr8 (8-94)||(43065959-43066044)
chr8 (8-56)||(1993732-1993780)
chr8 (9-94)||(14342241-14342328)
chr8 (12-48)||(4077061-4077097)
[»] chr2 (10 HSPs)
chr2 (8-94)||(13697019-13697105)
chr2 (8-94)||(17823621-17823707)
chr2 (8-94)||(32599302-32599388)
chr2 (9-94)||(36272715-36272800)
chr2 (8-57)||(42061322-42061371)
chr2 (8-93)||(40095305-40095390)
chr2 (9-96)||(36709244-36709330)
chr2 (15-57)||(23860255-23860297)
chr2 (8-37)||(14242626-14242655)
chr2 (16-56)||(33555455-33555495)
[»] chr1 (7 HSPs)
chr1 (8-94)||(1994995-1995080)
chr1 (8-94)||(2402979-2403065)
chr1 (8-94)||(32267519-32267605)
chr1 (8-96)||(29637262-29637350)
chr1 (8-94)||(44797521-44797606)
chr1 (8-92)||(27325684-27325768)
chr1 (8-45)||(1673411-1673448)
[»] chr7 (3 HSPs)
chr7 (8-94)||(46576296-46576382)
chr7 (15-94)||(30922764-30922843)
chr7 (8-94)||(33496541-33496627)
[»] scaffold0933 (1 HSPs)
scaffold0933 (8-50)||(3151-3193)


Alignment Details
Target: chr4 (Bit Score: 54; Significance: 1e-22; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 1e-22
Query Start/End: Original strand, 8 - 94
Target Start/End: Complemental strand, 25164611 - 25164525
Alignment:
Q  8 gtacacccacacacaattttgacaagtgttcttgtggtccctccacacacnnnnnnnctcacatatattgtctctcacacactctca 94  Q
    ||||||||||||||||||||||||||||| |||||||| |||||||||||       ||||||| ||||||||||||||||||||||    
T  25164611 gtacacccacacacaattttgacaagtgtccttgtggttcctccacacacaaaaaaactcacatgtattgtctctcacacactctca 25164525  T

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Target: chr4; HSP #2
Raw Score: 50; E-Value: 3e-20
Query Start/End: Original strand, 8 - 94
Target Start/End: Complemental strand, 45996034 - 45995949
Alignment:
Q  8 gtacacccacacacaattttgacaagtgttcttgtggtccctccacacacnnnnnnnctcacatatattgtctctcacacactctca 94  Q
    ||||||||||||||||||||||||||||||||||||||| | ||||||||       ||||||| ||||||||||||||||||||||    
T  45996034 gtacacccacacacaattttgacaagtgttcttgtggtctc-ccacacacaaaaaaactcacatgtattgtctctcacacactctca 45995949  T

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Target: chr4; HSP #3
Raw Score: 46; E-Value: 8e-18
Query Start/End: Original strand, 8 - 94
Target Start/End: Complemental strand, 37605831 - 37605745
Alignment:
Q  8 gtacacccacacacaattttgacaagtgttcttgtggtccctccacacacnnnnnnnctcacatatattgtctctcacacactctca 94  Q
    ||||||||||||||||||||||||||||| ||||||||||| ||||||||        |||||| ||||||| ||||||||||||||    
T  37605831 gtacacccacacacaattttgacaagtgtccttgtggtccccccacacacaaaaaaagtcacatgtattgtccctcacacactctca 37605745  T

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Target: chr4; HSP #4
Raw Score: 46; E-Value: 8e-18
Query Start/End: Original strand, 8 - 94
Target Start/End: Original strand, 55281250 - 55281336
Alignment:
Q  8 gtacacccacacacaattttgacaagtgttcttgtggtccctccacacacnnnnnnnctcacatatattgtctctcacacactctca 94  Q
    ||||||||||||||||||||||||||||| ||||||||||| ||||||||        |||||| |||||||||||||||| |||||    
T  55281250 gtacacccacacacaattttgacaagtgtccttgtggtccccccacacacaaaaaaagtcacatgtattgtctctcacacattctca 55281336  T

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Target: chr4; HSP #5
Raw Score: 43; E-Value: 5e-16
Query Start/End: Original strand, 8 - 92
Target Start/End: Original strand, 43749134 - 43749220
Alignment:
Q  8 gtacacccacacacaattttgacaagtgttcttgtggtccctc--cacacacnnnnnnnctcacatatattgtctctcacacactct 92  Q
    ||||||||||||| ||||||||||||||| |||||||||||||  |||||||       ||||||||||||||| ||||||||||||    
T  43749134 gtacacccacacataattttgacaagtgtccttgtggtccctccacacacacaaaaaagctcacatatattgtccctcacacactct 43749220  T

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Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.0000000000005
Query Start/End: Original strand, 8 - 94
Target Start/End: Original strand, 17044045 - 17044130
Alignment:
Q  8 gtacacccacacacaattttgacaagtgttcttgtggtccctccacacacnnnnnnnctcacatatattgtctctcacacactctca 94  Q
    ||||||||||||||||||||||||||||| |||||||| || ||||||||        || ||| ||||||||||||||||||||||    
T  17044045 gtacacccacacacaattttgacaagtgtccttgtggttcc-ccacacacaaaaaaagtcccatgtattgtctctcacacactctca 17044130  T

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Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000002
Query Start/End: Original strand, 8 - 56
Target Start/End: Original strand, 3287126 - 3287174
Alignment:
Q  8 gtacacccacacacaattttgacaagtgttcttgtggtccctccacaca 56  Q
    |||||||||||||||||||||||||| || ||||||||| |||||||||    
T  3287126 gtacacccacacacaattttgacaagagtccttgtggtctctccacaca 3287174  T

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Target: chr6 (Bit Score: 50; Significance: 3e-20; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 3e-20
Query Start/End: Original strand, 8 - 94
Target Start/End: Original strand, 9045875 - 9045960
Alignment:
Q  8 gtacacccacacacaattttgacaagtgttcttgtggtccctccacacacnnnnnnnctcacatatattgtctctcacacactctca 94  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||       || |||| ||||||||||||||||||||||    
T  9045875 gtacacccacacacaattttgacaagtgttcttgtggt-cctccacacacacaaaaacttacatgtattgtctctcacacactctca 9045960  T

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Target: chr6; HSP #2
Raw Score: 46; E-Value: 8e-18
Query Start/End: Original strand, 8 - 94
Target Start/End: Complemental strand, 14314126 - 14314040
Alignment:
Q  8 gtacacccacacacaattttgacaagtgttcttgtggtccctccacacacnnnnnnnctcacatatattgtctctcacacactctca 94  Q
    ||||||||||||||||||||||||||||| |||||||| || ||||||||        |||||| ||||||||||||||||||||||    
T  14314126 gtacacccacacacaattttgacaagtgtccttgtggttcccccacacacaaaaaaagtcacatgtattgtctctcacacactctca 14314040  T

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Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000002
Query Start/End: Original strand, 8 - 94
Target Start/End: Complemental strand, 34792791 - 34792705
Alignment:
Q  8 gtacacccacacacaattttgacaagtgttcttgtggtccctccacacacnnnnnnnctcacatatattgtctctcacacactctca 94  Q
    ||||||||||| | ||||||||||||||| ||||||||| ||| ||||||       ||||||| ||||||||||||||||||||||    
T  34792791 gtacacccacatataattttgacaagtgtccttgtggtctctctacacacacaaaaactcacatgtattgtctctcacacactctca 34792705  T

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Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.00000000000003
Query Start/End: Original strand, 8 - 96
Target Start/End: Complemental strand, 1244696 - 1244608
Alignment:
Q  8 gtacacccacacacaattttgacaagtgttcttgtggtccctccacacacnnnnnnnctcacatatattgtctctcacacactctcata 96  Q
    ||||| ||||||||||||||| ||||||| ||||||||||| ||||||||       ||||||| |||||||||||  |||||||||||    
T  1244696 gtacatccacacacaattttggcaagtgtccttgtggtccccccacacacaaaaaaactcacatgtattgtctctcgaacactctcata 1244608  T

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Target: chr5 (Bit Score: 50; Significance: 3e-20; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 3e-20
Query Start/End: Original strand, 8 - 94
Target Start/End: Original strand, 13988289 - 13988375
Alignment:
Q  8 gtacacccacacacaattttgacaagtgttcttgtggtccctccacacacnnnnnnnctcacatatattgtctctcacacactctca 94  Q
    ||||||||||||||||||||||||||||| ||||||||||| ||||||||        |||||| ||||||||||||||||||||||    
T  13988289 gtacacccacacacaattttgacaagtgtccttgtggtccccccacacacaaaaaaagtcacatgtattgtctctcacacactctca 13988375  T

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Target: chr5; HSP #2
Raw Score: 46; E-Value: 8e-18
Query Start/End: Original strand, 8 - 94
Target Start/End: Original strand, 36890419 - 36890504
Alignment:
Q  8 gtacacccacacacaattttgacaagtgttcttgtggtccctccacacacnnnnnnnctcacatatattgtctctcacacactctca 94  Q
    ||||||||||||||||||||||||||||| ||||||||||| ||||||||       ||||||| |||||||||||| |||||||||    
T  36890419 gtacacccacacacaattttgacaagtgtccttgtggtccc-ccacacacaaaaaaactcacatgtattgtctctcatacactctca 36890504  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 94
Target Start/End: Original strand, 11247234 - 11247320
Alignment:
Q  8 gtacacccacacacaattttgacaagtgttcttgtggtccctccacacacnnnnnnnctcacatatattgtctctcacacactctca 94  Q
    ||||| ||||||||||||||||||| |||  ||||| |||| | ||||||       ||||||| ||||||||||||||||||||||    
T  11247234 gtacatccacacacaattttgacaaatgtctttgtgatccccctacacacaaaaaaactcacatgtattgtctctcacacactctca 11247320  T

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Target: chr3 (Bit Score: 50; Significance: 3e-20; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 3e-20
Query Start/End: Original strand, 8 - 94
Target Start/End: Complemental strand, 12224143 - 12224057
Alignment:
Q  8 gtacacccacacacaattttgacaagtgttcttgtggtccctccacacacnnnnnnnctcacatatattgtctctcacacactctca 94  Q
    ||||||||||||||||||||||||||||| |||||||||||  |||||||       ||||||| ||||||||||||||||||||||    
T  12224143 gtacacccacacacaattttgacaagtgtccttgtggtcccctcacacacaagaaaactcacatgtattgtctctcacacactctca 12224057  T

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Target: chr3; HSP #2
Raw Score: 46; E-Value: 8e-18
Query Start/End: Original strand, 8 - 94
Target Start/End: Original strand, 38247840 - 38247926
Alignment:
Q  8 gtacacccacacacaattttgacaagtgttcttgtggtccctccacacacnnnnnnnctcacatatattgtctctcacacactctca 94  Q
    ||||||||||||||||||||||||||||| |||||||| || ||||||||        |||||| ||||||||||||||||||||||    
T  38247840 gtacacccacacacaattttgacaagtgtccttgtggttcccccacacacaaaaaaagtcacatgtattgtctctcacacactctca 38247926  T

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Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000002
Query Start/End: Original strand, 8 - 57
Target Start/End: Original strand, 9271152 - 9271201
Alignment:
Q  8 gtacacccacacacaattttgacaagtgttcttgtggtccctccacacac 57  Q
    ||||||||||||| ||||||||||||||| ||||||||||||||||||||    
T  9271152 gtacacccacacataattttgacaagtgtccttgtggtccctccacacac 9271201  T

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Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000002
Query Start/End: Original strand, 8 - 94
Target Start/End: Original strand, 50989245 - 50989331
Alignment:
Q  8 gtacacccacacacaattttgacaagtgttcttgtggtccctccacacacnnnnnnnctcacatatattgtctctcacacactctca 94  Q
    ||||||||||||||||||||||||||||| ||||||||||| | | || |       ||||||| ||||||||||||||||||||||    
T  50989245 gtacacccacacacaattttgacaagtgtccttgtggtccccctaaacgcaaaaaaactcacatgtattgtctctcacacactctca 50989331  T

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Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000002
Query Start/End: Original strand, 8 - 94
Target Start/End: Original strand, 51092377 - 51092463
Alignment:
Q  8 gtacacccacacacaattttgacaagtgttcttgtggtccctccacacacnnnnnnnctcacatatattgtctctcacacactctca 94  Q
    ||||||||||||||||||||||||||||| ||||||||||| | | || |       ||||||| ||||||||||||||||||||||    
T  51092377 gtacacccacacacaattttgacaagtgtccttgtggtccccctaaacgcaaaaaaactcacatgtattgtctctcacacactctca 51092463  T

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Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000001
Query Start/End: Original strand, 8 - 94
Target Start/End: Complemental strand, 48034949 - 48034862
Alignment:
Q  8 gtacacccacacacaattttgacaagtgttcttgtggtccctcc-acacacnnnnnnnctcacatatattgtctctcacacactctca 94  Q
    ||||||||||| ||||||||||||||||| ||||||||||| || ||||||       |||| || ||||||||||||||||||||||    
T  48034949 gtacacccacatacaattttgacaagtgtccttgtggtcccccccacacacaaaaaaactcaaatgtattgtctctcacacactctca 48034862  T

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Target: chr8 (Bit Score: 46; Significance: 8e-18; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 8e-18
Query Start/End: Original strand, 8 - 94
Target Start/End: Complemental strand, 43066044 - 43065959
Alignment:
Q  8 gtacacccacacacaattttgacaagtgttcttgtggtccctccacacacnnnnnnnctcacatatattgtctctcacacactctca 94  Q
    ||||| ||||||||||||||||||||||| ||||||||||| ||||||||       ||||||| ||||||||||||||||||||||    
T  43066044 gtacatccacacacaattttgacaagtgtccttgtggtccc-ccacacacaaaaaaactcacatgtattgtctctcacacactctca 43065959  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000002
Query Start/End: Original strand, 8 - 56
Target Start/End: Complemental strand, 1993780 - 1993732
Alignment:
Q  8 gtacacccacacacaattttgacaagtgttcttgtggtccctccacaca 56  Q
    ||||||||||||||||||||||||||||| ||||||||| | |||||||    
T  1993780 gtacacccacacacaattttgacaagtgtccttgtggtctccccacaca 1993732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.000000007
Query Start/End: Original strand, 9 - 94
Target Start/End: Complemental strand, 14342328 - 14342241
Alignment:
Q  9 tacacccacacacaatttt-gacaagtgttcttgtggtccctccacacac-nnnnnnnctcacatatattgtctctcacacactctca 94  Q
    ||||||||||||||||||| ||||||||| ||||||||||| ||| ||||         |||||| ||||||||||||||||||||||    
T  14342328 tacacccacacacaatttttgacaagtgtccttgtggtccccccatacacaaaaaaaattcacatgtattgtctctcacacactctca 14342241  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 48
Target Start/End: Complemental strand, 4077097 - 4077061
Alignment:
Q  12 acccacacacaattttgacaagtgttcttgtggtccc 48  Q
    |||||||||||| ||||| ||||||||||||||||||    
T  4077097 acccacacacaactttgataagtgttcttgtggtccc 4077061  T

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Target: chr2 (Bit Score: 46; Significance: 8e-18; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 8e-18
Query Start/End: Original strand, 8 - 94
Target Start/End: Complemental strand, 13697105 - 13697019
Alignment:
Q  8 gtacacccacacacaattttgacaagtgttcttgtggtccctccacacacnnnnnnnctcacatatattgtctctcacacactctca 94  Q
    ||||||||||||||||||||||||||||| |||||||| || ||||||||        |||||| ||||||||||||||||||||||    
T  13697105 gtacacccacacacaattttgacaagtgtccttgtggttcccccacacacaaaaaaagtcacatgtattgtctctcacacactctca 13697019  T

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Target: chr2; HSP #2
Raw Score: 46; E-Value: 8e-18
Query Start/End: Original strand, 8 - 94
Target Start/End: Original strand, 17823621 - 17823707
Alignment:
Q  8 gtacacccacacacaattttgacaagtgttcttgtggtccctccacacacnnnnnnnctcacatatattgtctctcacacactctca 94  Q
    ||||||||||| |||||||||| |||||| ||||||||||| ||||||||       ||||||| ||||||||||||||||||||||    
T  17823621 gtacacccacatacaattttgataagtgtccttgtggtccccccacacacaaaaaaactcacatgtattgtctctcacacactctca 17823707  T

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Target: chr2; HSP #3
Raw Score: 46; E-Value: 8e-18
Query Start/End: Original strand, 8 - 94
Target Start/End: Complemental strand, 32599388 - 32599302
Alignment:
Q  8 gtacacccacacacaattttgacaagtgttcttgtggtccctccacacacnnnnnnnctcacatatattgtctctcacacactctca 94  Q
    ||||| ||||||| ||||||||||||||| ||||||||||||||||||||       ||||||| |||||||| |||||||||||||    
T  32599388 gtacatccacacataattttgacaagtgtccttgtggtccctccacacacaaaaaaactcacatgtattgtctgtcacacactctca 32599302  T

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Target: chr2; HSP #4
Raw Score: 45; E-Value: 3e-17
Query Start/End: Original strand, 9 - 94
Target Start/End: Complemental strand, 36272800 - 36272715
Alignment:
Q  9 tacacccacacacaattttgacaagtgttcttgtggtccctccacacacnnnnnnnctcacatatattgtctctcacacactctca 94  Q
    |||||||||||||||||||||||||||| |||||||||||  |||||||       ||||||| |||||||| |||||||||||||    
T  36272800 tacacccacacacaattttgacaagtgtccttgtggtccccacacacacaaaaaaactcacatgtattgtctttcacacactctca 36272715  T

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Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.0000000000005
Query Start/End: Original strand, 8 - 57
Target Start/End: Complemental strand, 42061371 - 42061322
Alignment:
Q  8 gtacacccacacacaattttgacaagtgttcttgtggtccctccacacac 57  Q
    ||||||||||| ||||||||||||||||| ||||||||||| ||||||||    
T  42061371 gtacacccacatacaattttgacaagtgtccttgtggtccccccacacac 42061322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000002
Query Start/End: Original strand, 8 - 93
Target Start/End: Original strand, 40095305 - 40095390
Alignment:
Q  8 gtacacccacacacaattttgacaagtgttcttgtggtccctccacacacnnnnnnnctcacatatattgtctctcacacactctc 93  Q
    ||||| ||||| |||||||||||||||||  |||||||||| ||||||||       || |||| |||||||||||||||||||||    
T  40095305 gtacatccacatacaattttgacaagtgtcattgtggtccccccacacacaaaaaaacttacatgtattgtctctcacacactctc 40095390  T

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Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000001
Query Start/End: Original strand, 9 - 96
Target Start/End: Complemental strand, 36709330 - 36709244
Alignment:
Q  9 tacacccacacacaattttgacaagtgttcttgtggtccctccacacacnnnnnnnctcacatatattgtctctcacacactctcata 96  Q
    |||||||||||||||||||||||| |||  |||||||||| ||||||||       ||||||| |||||||| ||||||| |||||||    
T  36709330 tacacccacacacaattttgacaaatgtcattgtggtccccccacacac-aaaaaactcacatgtattgtctgtcacacattctcata 36709244  T

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Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.000000007
Query Start/End: Original strand, 15 - 57
Target Start/End: Complemental strand, 23860297 - 23860255
Alignment:
Q  15 cacacacaattttgacaagtgttcttgtggtccctccacacac 57  Q
    ||||||| ||||||||||||||||||||| |||| ||||||||    
T  23860297 cacacactattttgacaagtgttcttgtgatccccccacacac 23860255  T

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Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 37
Target Start/End: Complemental strand, 14242655 - 14242626
Alignment:
Q  8 gtacacccacacacaattttgacaagtgtt 37  Q
    ||||||||||||||||||||||||||||||    
T  14242655 gtacacccacacacaattttgacaagtgtt 14242626  T

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Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 56
Target Start/End: Complemental strand, 33555495 - 33555455
Alignment:
Q  16 acacacaattttgacaagtgttcttgtggtccctccacaca 56  Q
    |||||||||||||||||||||  |||||||||| |||||||    
T  33555495 acacacaattttgacaagtgtcattgtggtccccccacaca 33555455  T

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Target: chr1 (Bit Score: 46; Significance: 8e-18; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 8e-18
Query Start/End: Original strand, 8 - 94
Target Start/End: Original strand, 1994995 - 1995080
Alignment:
Q  8 gtacacccacacacaattttgacaagtgttcttgtggtccctccacacacnnnnnnnctcacatatattgtctctcacacactctca 94  Q
    |||||||||||||||||||||||||||||  ||||||| |||||||||||       ||||||| ||||||||||||||||||||||    
T  1994995 gtacacccacacacaattttgacaagtgtctttgtggt-cctccacacacaaaaaaactcacatgtattgtctctcacacactctca 1995080  T

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Target: chr1; HSP #2
Raw Score: 46; E-Value: 8e-18
Query Start/End: Original strand, 8 - 94
Target Start/End: Complemental strand, 2403065 - 2402979
Alignment:
Q  8 gtacacccacacacaattttgacaagtgttcttgtggtccctccacacacnnnnnnnctcacatatattgtctctcacacactctca 94  Q
    |||||||||||||||||||||| |||||||||||||||||| |||||||        ||||||| ||||||||||| ||||||||||    
T  2403065 gtacacccacacacaattttgaaaagtgttcttgtggtccccccacacaaaaaaaaactcacatgtattgtctctcgcacactctca 2402979  T

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Target: chr1; HSP #3
Raw Score: 46; E-Value: 8e-18
Query Start/End: Original strand, 8 - 94
Target Start/End: Complemental strand, 32267605 - 32267519
Alignment:
Q  8 gtacacccacacacaattttgacaagtgttcttgtggtccctccacacacnnnnnnnctcacatatattgtctctcacacactctca 94  Q
    ||||||||||||||||||||||||||||| |||||||||| |||||| ||       ||||||| ||||| ||||||||||||||||    
T  32267605 gtacacccacacacaattttgacaagtgtccttgtggtccttccacatacaaaaaaactcacatgtattggctctcacacactctca 32267519  T

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Target: chr1; HSP #4
Raw Score: 44; E-Value: 1e-16
Query Start/End: Original strand, 8 - 96
Target Start/End: Complemental strand, 29637350 - 29637262
Alignment:
Q  8 gtacacccacacacaattttgacaagtgttcttgtggtccctccacacacnnnnnnnctcacatatattgtctctcacacactctcata 96  Q
    ||||||||||||||||||||||||||||| ||||||||||  ||||||||       |||| || ||||||||||| ||||||||||||    
T  29637350 gtacacccacacacaattttgacaagtgtccttgtggtcctcccacacacaaaaaaactcatatgtattgtctctctcacactctcata 29637262  T

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Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.000000000000002
Query Start/End: Original strand, 8 - 94
Target Start/End: Complemental strand, 44797606 - 44797521
Alignment:
Q  8 gtacacccacacacaattttgacaagtgttcttgtggtccctccacacacnnnnnnnctcacatatattgtctctcacacactctca 94  Q
    |||||||||||||||||||||| |||||| ||||||||||| ||| ||||       ||||||| ||||||||||||||||||||||    
T  44797606 gtacacccacacacaattttgataagtgtccttgtggtccc-ccaaacacaaaaaaactcacatgtattgtctctcacacactctca 44797521  T

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Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.00000000000003
Query Start/End: Original strand, 8 - 92
Target Start/End: Complemental strand, 27325768 - 27325684
Alignment:
Q  8 gtacacccacacacaattttgacaagtgttcttgtggtccctccacacacnnnnnnnctcacatatattgtctctcacacactct 92  Q
    |||||||||||||||||||||| |||||| |||||||| || ||||||||        |||||| ||||||||||||||||||||    
T  27325768 gtacacccacacacaattttgataagtgtccttgtggttcccccacacacaaaaaaagtcacatgtattgtctctcacacactct 27325684  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 45
Target Start/End: Original strand, 1673411 - 1673448
Alignment:
Q  8 gtacacccacacacaattttgacaagtgttcttgtggt 45  Q
    |||||||||||||||||||||| |||||| ||||||||    
T  1673411 gtacacccacacacaattttgataagtgtccttgtggt 1673448  T

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Target: chr7 (Bit Score: 42; Significance: 0.000000000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000002
Query Start/End: Original strand, 8 - 94
Target Start/End: Complemental strand, 46576382 - 46576296
Alignment:
Q  8 gtacacccacacacaattttgacaagtgttcttgtggtccctccacacacnnnnnnnctcacatatattgtctctcacacactctca 94  Q
    |||||||||||||||||||| |||||||| |||||||| || ||||||||        |||||| ||||||||||||||||||||||    
T  46576382 gtacacccacacacaattttaacaagtgtccttgtggttcccccacacacaaaaaaagtcacatgtattgtctctcacacactctca 46576296  T

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Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000001
Query Start/End: Original strand, 15 - 94
Target Start/End: Complemental strand, 30922843 - 30922764
Alignment:
Q  15 cacacacaattttgacaagtgttcttgtggtccctccacacacnnnnnnnctcacatatattgtctctcacacactctca 94  Q
    |||||| ||||||||||||||| ||||| ||||| ||||||||       ||||||| ||||||||||||||||||||||    
T  30922843 cacacataattttgacaagtgtccttgtagtccccccacacacaaaaaaactcacatgtattgtctctcacacactctca 30922764  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 94
Target Start/End: Original strand, 33496541 - 33496627
Alignment:
Q  8 gtacacccacacacaattttgacaagtgttcttgtggtccctccacacacnnnnnnnctcacatatattgtctctcacacactctca 94  Q
    ||||||||||| | |||||||||||||||  ||||| |||| ||||||||       |||| || ||||||||||||||||||||||    
T  33496541 gtacacccacatataattttgacaagtgtctttgtgatccccccacacacaaaaaaactcatatgtattgtctctcacacactctca 33496627  T

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Target: scaffold0933 (Bit Score: 31; Significance: 0.000000007; HSPs: 1)
Name: scaffold0933
Description:

Target: scaffold0933; HSP #1
Raw Score: 31; E-Value: 0.000000007
Query Start/End: Original strand, 8 - 50
Target Start/End: Complemental strand, 3193 - 3151
Alignment:
Q  8 gtacacccacacacaattttgacaagtgttcttgtggtccctc 50  Q
    ||||||||||| ||||||||||||||||| ||||| |||||||    
T  3193 gtacacccacatacaattttgacaagtgtccttgtagtccctc 3151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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