View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5684-42 (Length: 85)
Name: Solexa-NF5684-42
Description: NF5684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5684-42 |
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| [»] scaffold1412 (1 HSPs) |
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| [»] scaffold0001 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 57; Significance: 2e-24; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 57; E-Value: 2e-24
Query Start/End: Original strand, 7 - 79
Target Start/End: Original strand, 35267817 - 35267889
Alignment:
| Q |
7 |
agcatcaaagcaacgctcaaccaccatccggcagaagcaatcatcaacaaagccaattcaggcacaatactta |
79 |
Q |
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| T |
35267817 |
agcatcaaagcaacgcttaaccaccatccggcagaagcaatcatcaacaatgccaattaaggcacaacactta |
35267889 |
T |
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Target: chr8 (Bit Score: 53; Significance: 5e-22; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 53; E-Value: 5e-22
Query Start/End: Original strand, 7 - 71
Target Start/End: Complemental strand, 26175224 - 26175160
Alignment:
| Q |
7 |
agcatcaaagcaacgctcaaccaccatccggcagaagcaatcatcaacaaagccaattcaggcac |
71 |
Q |
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| T |
26175224 |
agcatcaaagcaacgcttaaccaccatccggtagaagcaatcatcaacaaagccaattaaggcac |
26175160 |
T |
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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000001
Query Start/End: Original strand, 36 - 73
Target Start/End: Complemental strand, 4677554 - 4677517
Alignment:
| Q |
36 |
ggcagaagcaatcatcaacaaagccaattcaggcacaa |
73 |
Q |
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| T |
4677554 |
ggcagaagcaatcatcaacaaagccaattaaggcacaa |
4677517 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.000000006
Query Start/End: Original strand, 7 - 60
Target Start/End: Original strand, 7275475 - 7275529
Alignment:
| Q |
7 |
agcatcaaagcaacgctcaaccaccatccggcagaag-caatcatcaacaaagcc |
60 |
Q |
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| T |
7275475 |
agcagcaaaccaacgcttaaccaccatccggtagaagccaatcatcaacaaagcc |
7275529 |
T |
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Target: chr4 (Bit Score: 35; Significance: 0.00000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000003
Query Start/End: Original strand, 7 - 61
Target Start/End: Complemental strand, 5444499 - 5444445
Alignment:
| Q |
7 |
agcatcaaagcaacgctcaaccaccatccggcagaagcaatcatcaacaaagcca |
61 |
Q |
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|||| |||||||||||| ||||||||||||| |||||| | |||||||||||||| |
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| T |
5444499 |
agcaacaaagcaacgcttaaccaccatccggtagaagccaacatcaacaaagcca |
5444445 |
T |
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Target: chr3 (Bit Score: 35; Significance: 0.00000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000003
Query Start/End: Original strand, 7 - 73
Target Start/End: Complemental strand, 4607244 - 4607178
Alignment:
| Q |
7 |
agcatcaaagcaacgctcaaccaccatccggcagaagcaatcatcaacaaagccaattcaggcacaa |
73 |
Q |
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||||||||||||||||| || |||||||||| |||||| | |||| |||||||||||| ||||||| |
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| T |
4607244 |
agcatcaaagcaacgcttaaacaccatccggtagaagccaacatcgacaaagccaattagggcacaa |
4607178 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1412 (Bit Score: 31; Significance: 0.000000006; HSPs: 1)
Name: scaffold1412
Description:
Target: scaffold1412; HSP #1
Raw Score: 31; E-Value: 0.000000006
Query Start/End: Original strand, 7 - 61
Target Start/End: Original strand, 78 - 132
Alignment:
| Q |
7 |
agcatcaaagcaacgctcaaccaccatccggcagaagcaatcatcaacaaagcca |
61 |
Q |
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||||||||||||||||| ||||||||||||| |||||| | ||| ||||||||| |
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| T |
78 |
agcatcaaagcaacgcttaaccaccatccggtagaagccaatatccacaaagcca |
132 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0001 (Bit Score: 31; Significance: 0.000000006; HSPs: 1)
Name: scaffold0001
Description:
Target: scaffold0001; HSP #1
Raw Score: 31; E-Value: 0.000000006
Query Start/End: Original strand, 7 - 61
Target Start/End: Original strand, 144976 - 145030
Alignment:
| Q |
7 |
agcatcaaagcaacgctcaaccaccatccggcagaagcaatcatcaacaaagcca |
61 |
Q |
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||||||||||||||||| ||||||||||||| |||||| | ||| ||||||||| |
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| T |
144976 |
agcatcaaagcaacgcttaaccaccatccggtagaagccaatatccacaaagcca |
145030 |
T |
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Target: chr6 (Bit Score: 31; Significance: 0.000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.000000006
Query Start/End: Original strand, 7 - 61
Target Start/End: Original strand, 6823350 - 6823404
Alignment:
| Q |
7 |
agcatcaaagcaacgctcaaccaccatccggcagaagcaatcatcaacaaagcca |
61 |
Q |
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||||||||||||||||| ||||||||||||| |||||| | ||| ||||||||| |
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| T |
6823350 |
agcatcaaagcaacgcttaaccaccatccggtagaagccaatatccacaaagcca |
6823404 |
T |
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Target: chr7 (Bit Score: 30; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 44
Target Start/End: Complemental strand, 34512629 - 34512592
Alignment:
| Q |
7 |
agcatcaaagcaacgctcaaccaccatccggcagaagc |
44 |
Q |
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||||||||||||||||| ||||||||||||| |||||| |
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| T |
34512629 |
agcatcaaagcaacgcttaaccaccatccggtagaagc |
34512592 |
T |
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