View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: Solexa-NF5684-44 (Length: 69)
Name: Solexa-NF5684-44
Description: NF5684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5684-44 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 60; Significance: 2e-26; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 60; E-Value: 2e-26
Query Start/End: Original strand, 8 - 67
Target Start/End: Complemental strand, 1890776 - 1890717
Alignment:
| Q |
8 |
tgaagtgtggctgctttgaacaaagtgagtaaagccatttcaatagtttcctgtcctatg |
67 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1890776 |
tgaagtgtggctgctttgaacaaagtgagtaaagccatttcaatagtttcctgtcctatg |
1890717 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 55; E-Value: 2e-23
Query Start/End: Original strand, 13 - 67
Target Start/End: Complemental strand, 1895621 - 1895567
Alignment:
| Q |
13 |
tgtggctgctttgaacaaagtgagtaaagccatttcaatagtttcctgtcctatg |
67 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1895621 |
tgtggctgctttgaacaaagtgagtaaagccatttcaatagtttcctgtcctatg |
1895567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000001
Query Start/End: Original strand, 8 - 52
Target Start/End: Complemental strand, 1911082 - 1911038
Alignment:
| Q |
8 |
tgaagtgtggctgctttgaacaaagtgagtaaagccatttcaata |
52 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||| |||||| |
|
|
| T |
1911082 |
tgaagtgtagctgctttgaacaaagtgagtaaagccatgtcaata |
1911038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.000000005
Query Start/End: Original strand, 8 - 50
Target Start/End: Complemental strand, 1884132 - 1884090
Alignment:
| Q |
8 |
tgaagtgtggctgctttgaacaaagtgagtaaagccatttcaa |
50 |
Q |
| |
|
|||||||| ||||||||||||||||| ||||||||||| |||| |
|
|
| T |
1884132 |
tgaagtgtagctgctttgaacaaagtcagtaaagccatgtcaa |
1884090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University