View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5684-46 (Length: 173)
Name: Solexa-NF5684-46
Description: NF5684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5684-46 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 114; Significance: 4e-58; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 114; E-Value: 4e-58
Query Start/End: Original strand, 8 - 173
Target Start/End: Original strand, 7375656 - 7375824
Alignment:
| Q |
8 |
gaagaggaggaatcttgtggagaaacacagacataatggttgcatttgatgacttttgctttctttaatgatcttgtttttgtaatgaa-tttgt--tct |
104 |
Q |
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| T |
7375656 |
gaagaggaggaatgttgatgccaaacacagacataatggttgcatttgatgacttttgctttgtttaatgatcttgtctttgtaatgaattttgttgtct |
7375755 |
T |
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| Q |
105 |
ctcaatcatgtgtttattgtgatcaatgtaactaacttcaatgaaagtggcttccaaactctcttgaca |
173 |
Q |
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| T |
7375756 |
ctcaatcatgtgtttattgtgatcaatgtaactaacttcaaagaaagtggcttccaaattctcttgaca |
7375824 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 93; E-Value: 1e-45
Query Start/End: Original strand, 8 - 157
Target Start/End: Complemental strand, 7278183 - 7278029
Alignment:
| Q |
8 |
gaagaggaggaatcttgtggagaaacacagacataatggttgcatttgatgacttttgctttctttaatgatcttgtttttgtaatgaa-tttgt--tct |
104 |
Q |
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| T |
7278183 |
gaagaggaggaatgttgatgccaaacacagacataatggttgcatttgatgacttttgctttgtttaatgatcttgtctttgtaatgaattttgttgtct |
7278084 |
T |
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| Q |
105 |
ctcaatcatgtgtttattgtg--atcaatgtaactaacttcaatgaaagtggctt |
157 |
Q |
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| T |
7278083 |
ctcaatcatgtgtttattgtgatatcagtgtaactaacttcaatgaaagtggctt |
7278029 |
T |
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