View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5684-47 (Length: 88)
Name: Solexa-NF5684-47
Description: NF5684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5684-47 |
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| [»] chr7 (1 HSPs) |
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| [»] chr4 (3 HSPs) |
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| [»] chr1 (1 HSPs) |
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| [»] chr5 (1 HSPs) |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 84; Significance: 2e-40; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 84; E-Value: 2e-40
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 6933327 - 6933414
Alignment:
| Q |
1 |
cacagatgtattagaaatgataccttgggatggatgtaaagctaagcaaatagcttctgccccaagaacagaggactgtgttggttgt |
88 |
Q |
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| T |
6933327 |
cacagatgtattagaaatgataccttgggatggatgtaaggctaagcaaatagcttctgccccaagaacagaggactgtgttggttgt |
6933414 |
T |
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Target: chr4 (Bit Score: 84; Significance: 2e-40; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 84; E-Value: 2e-40
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 509388 - 509475
Alignment:
| Q |
1 |
cacagatgtattagaaatgataccttgggatggatgtaaagctaagcaaatagcttctgccccaagaacagaggactgtgttggttgt |
88 |
Q |
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| T |
509388 |
cacagatgtattagaaatgataccttgggatggatgtaaggctaagcaaatagcttctgccccaagaacagaggactgtgttggttgt |
509475 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 84; E-Value: 2e-40
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 18088547 - 18088460
Alignment:
| Q |
1 |
cacagatgtattagaaatgataccttgggatggatgtaaagctaagcaaatagcttctgccccaagaacagaggactgtgttggttgt |
88 |
Q |
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| T |
18088547 |
cacagatgtattagaaatgataccttgggatggatgtaaggctaagcaaatagcttctgccccaagaacagaggactgtgttggttgt |
18088460 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 53; E-Value: 5e-22
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 9071991 - 9072076
Alignment:
| Q |
1 |
cacagatgtattagaaatgataccttgggatggatgtaaagctaagcaaatagcttctgccccaagaacagaggactgtgttggttgt |
88 |
Q |
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| T |
9071991 |
cacaaatgtattacaaatgataccttgagatagatgtaaagctaagtaaatagcttctgccccaaga--agtggactgtgttggttgt |
9072076 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 84; Significance: 2e-40; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 84; E-Value: 2e-40
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 15758455 - 15758542
Alignment:
| Q |
1 |
cacagatgtattagaaatgataccttgggatggatgtaaagctaagcaaatagcttctgccccaagaacagaggactgtgttggttgt |
88 |
Q |
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| T |
15758455 |
cacagatgtattagaaatgataccttgggatggatgtaaagctaagcaaatagcttctgccccaagaacaaaggactgtgttggttgt |
15758542 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 80; Significance: 4e-38; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 80; E-Value: 4e-38
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 21547837 - 21547924
Alignment:
| Q |
1 |
cacagatgtattagaaatgataccttgggatggatgtaaagctaagcaaatagcttctgccccaagaacagaggactgtgttggttgt |
88 |
Q |
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| T |
21547837 |
cacagatgtattagaaatgatacattgggatggatgtaaagctaagcaaatagcttctgccccaagaacataggactgtgttggttgt |
21547924 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 55; Significance: 3e-23; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 55; E-Value: 3e-23
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 1023933 - 1024015
Alignment:
| Q |
1 |
cacagatgtattagaaatgataccttgggatggatgtaaagctaagcaaatagcttctgccccaagaacagaggactgtgttg |
83 |
Q |
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| T |
1023933 |
cacatatgtattagaaatgataccttaggatagatgtaaagttaagcaaatagcttctatcccaagaatagaggactgtgttg |
1024015 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 54; E-Value: 1e-22
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 30234623 - 30234554
Alignment:
| Q |
1 |
cacagatgtattagaaatgataccttgggatggatgtaaagctaagcaaatagcttctgccccaagaaca |
70 |
Q |
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| T |
30234623 |
cacagatgtattagaaatcatgccttgggatggatgtaaagctaagcaaatagcttatgcaccaagaaca |
30234554 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.000000006
Query Start/End: Original strand, 46 - 88
Target Start/End: Complemental strand, 30234552 - 30234510
Alignment:
| Q |
46 |
gcaaatagcttctgccccaagaacagaggactgtgttggttgt |
88 |
Q |
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| T |
30234552 |
gcaaatagcttatgcaccaagaacataggactgtgttggttgt |
30234510 |
T |
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Target: scaffold0002 (Bit Score: 47; Significance: 2e-18; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 47; E-Value: 2e-18
Query Start/End: Original strand, 2 - 88
Target Start/End: Original strand, 171067 - 171153
Alignment:
| Q |
2 |
acagatgtattagaaatgataccttgggatggatgtaaagctaagcaaatagcttctgccccaagaacagaggactgtgttggttgt |
88 |
Q |
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| T |
171067 |
acagatgtattagaaatgataccctgggatggatgtaaagccaagcaaattgcttccgcgccgagaaccgaagattgtgtgggttgt |
171153 |
T |
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