View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5684-48 (Length: 114)
Name: Solexa-NF5684-48
Description: NF5684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5684-48 |
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Alignment Details
Target: chr2 (Bit Score: 90; Significance: 6e-44; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 90; E-Value: 6e-44
Query Start/End: Original strand, 8 - 112
Target Start/End: Original strand, 5373352 - 5373454
Alignment:
| Q |
8 |
atagatgacatgcctgacacctataaatgtcatatggcatccatttgagtattaatgtctggtaatcccacttgataatatatgtctttacggtggttgt |
107 |
Q |
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| T |
5373352 |
atagatgacatgcctgacacctataaatgtcatatggcatccatttgagtattaatgtcaggtaatcccacttgata--atatgtctttacggtggttgt |
5373449 |
T |
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| Q |
108 |
cgtct |
112 |
Q |
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||||| |
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| T |
5373450 |
cgtct |
5373454 |
T |
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