View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: Solexa-NF5684-50 (Length: 146)
Name: Solexa-NF5684-50
Description: NF5684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5684-50 |
 | |
|
| [»] chr5 (2 HSPs) |
| |
|
| [»] chr1 (2 HSPs) |
| |
|
| [»] chr3 (4 HSPs) |
| |
|
| [»] chr2 (4 HSPs) |
| |
|
| [»] chr7 (1 HSPs) |
| |
|
| [»] chr6 (1 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 145; Significance: 1e-76; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 145; E-Value: 1e-76
Query Start/End: Original strand, 2 - 146
Target Start/End: Original strand, 9421681 - 9421825
Alignment:
| Q |
2 |
gtagcaaaggcttccaaacttgaccaaaaatcgggctacgatgccagaaatcggagcacgattttctgcattcttcaagtatcaaaattgttcttttgta |
101 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9421681 |
gtagcaaaggcttccaaacttgaccaaaaatcgggctacgatgccagaaatcggagcacgattttctgcattcttcaagtatcaaaattgttcttttgta |
9421780 |
T |
|
| Q |
102 |
gcttcaaacttatgcaaaaacacctgaactcaactagaattacat |
146 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9421781 |
gcttcaaacttatgcaaaaacacctgaactcaactagaattacat |
9421825 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 29 - 146
Target Start/End: Complemental strand, 7289391 - 7289273
Alignment:
| Q |
29 |
aaatcgggctacgatgccagaaatcggagcacga-ttttctgcattcttcaagtatcaaaattgttcttttgtagcttcaaacttatgcaaa-aacacct |
126 |
Q |
| |
|
||||||||||| ||||| | | |||||||||||| |||||| | | ||||||||||||| || |||||| || |||| ||||| |||||| |||| || |
|
|
| T |
7289391 |
aaatcgggctatgatgcaaaatatcggagcacgatttttctacttccttcaagtatcaattctg-tcttttctaacttctaacttgtgcaaacaacatct |
7289293 |
T |
|
| Q |
127 |
gaactcaactagaattacat |
146 |
Q |
| |
|
||||||||||| |||||||| |
|
|
| T |
7289292 |
gaactcaactaaaattacat |
7289273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 133; Significance: 2e-69; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 133; E-Value: 2e-69
Query Start/End: Original strand, 2 - 146
Target Start/End: Complemental strand, 17761264 - 17761120
Alignment:
| Q |
2 |
gtagcaaaggcttccaaacttgaccaaaaatcgggctacgatgccagaaatcggagcacgattttctgcattcttcaagtatcaaaattgttcttttgta |
101 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
17761264 |
gtagcaaaggcttccaaacttgaccaaaaatcgggctacgatgccagaaattggagcacgattttctgctttcttcaagtatcaaaattgttcttttgta |
17761165 |
T |
|
| Q |
102 |
gcttcaaacttatgcaaaaacacctgaactcaactagaattacat |
146 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17761164 |
acttcaaacttatgcaaaaacacctgaactcaactagaattacat |
17761120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 101; E-Value: 2e-50
Query Start/End: Original strand, 2 - 146
Target Start/End: Original strand, 45533320 - 45533464
Alignment:
| Q |
2 |
gtagcaaaggcttccaaacttgaccaaaaatcgggctacgatgccagaaatcggagcacgattttctgcattcttcaagtatcaaaattgttcttttgta |
101 |
Q |
| |
|
|||||||| |||||||||||||||||||||| || |||| |||| ||||||| |||||| |||| |||| | |||||||||||||| ||||||||||||| |
|
|
| T |
45533320 |
gtagcaaaagcttccaaacttgaccaaaaattggactacaatgcaagaaatcagagcacaatttcctgcttccttcaagtatcaaatttgttcttttgta |
45533419 |
T |
|
| Q |
102 |
gcttcaaacttatgcaaaaacacctgaactcaactagaattacat |
146 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45533420 |
gcttcaaacttatgcaaaaacacctgaactcaactagaattacat |
45533464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 114; Significance: 4e-58; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 114; E-Value: 4e-58
Query Start/End: Original strand, 2 - 146
Target Start/End: Complemental strand, 53189149 - 53189004
Alignment:
| Q |
2 |
gtagcaaaggcttccaaacttgaccaaaaatcgggctacgatgccagaaatcggagcacgattttctgcattcttcaagtatcaaaattgttcttt-tgt |
100 |
Q |
| |
|
|||||||||| ||||||||||||||| ||||||| ||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||| ||| |
|
|
| T |
53189149 |
gtagcaaaggattccaaacttgaccagaaatcggactacgatgccagaaatcggagcacgatttcctgcatccttcaagtatcaaaattgttctttctgt |
53189050 |
T |
|
| Q |
101 |
agcttcaaacttatgcaaaaacacctgaactcaactagaattacat |
146 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
53189049 |
agcttcaaacttatgcaaaaacacctgaactcatctagaattacat |
53189004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 106; E-Value: 2e-53
Query Start/End: Original strand, 2 - 146
Target Start/End: Complemental strand, 6731251 - 6731106
Alignment:
| Q |
2 |
gtagcaaaggcttccaaacttgaccaaaaatcgggctacgatgccagaaatcggagcacgattttctgcattcttcaagtatcaaaattgttcttt-tgt |
100 |
Q |
| |
|
|||||||| ||||||| ||||||||| |||||||||||||||| |||||||||||||||||||| |||||||||||||| |||||||||||||||| ||| |
|
|
| T |
6731251 |
gtagcaaaagcttccagacttgaccacaaatcgggctacgatggcagaaatcggagcacgatttcctgcattcttcaagcatcaaaattgttctttctgt |
6731152 |
T |
|
| Q |
101 |
agcttcaaacttatgcaaaaacacctgaactcaactagaattacat |
146 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
6731151 |
ggcttcaaacttatgcaaaaacacctgaactcatctagaattacat |
6731106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 106; E-Value: 2e-53
Query Start/End: Original strand, 2 - 146
Target Start/End: Original strand, 6765993 - 6766138
Alignment:
| Q |
2 |
gtagcaaaggcttccaaacttgaccaaaaatcgggctacgatgccagaaatcggagcacgattttctgcattcttcaagtatcaaaattgttcttt-tgt |
100 |
Q |
| |
|
|||||||| ||||||| ||||||||| |||||||||||||||| |||||||||||||||||||| |||||||||||||| |||||||||||||||| ||| |
|
|
| T |
6765993 |
gtagcaaaagcttccagacttgaccacaaatcgggctacgatggcagaaatcggagcacgatttcctgcattcttcaagcatcaaaattgttctttctgt |
6766092 |
T |
|
| Q |
101 |
agcttcaaacttatgcaaaaacacctgaactcaactagaattacat |
146 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
6766093 |
ggcttcaaacttatgcaaaaacacctgaactcatctagaattacat |
6766138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 89 - 146
Target Start/End: Complemental strand, 19193031 - 19192974
Alignment:
| Q |
89 |
ttgttcttttgtagcttcaaacttatgcaaaaacacctgaactcaactagaattacat |
146 |
Q |
| |
|
||||||||||| ||||||||||| ||||| || ||||| |||||||| | |||||||| |
|
|
| T |
19193031 |
ttgttcttttgcagcttcaaactcatgcataatcacctaaactcaaccaaaattacat |
19192974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 114; Significance: 4e-58; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 114; E-Value: 4e-58
Query Start/End: Original strand, 2 - 146
Target Start/End: Complemental strand, 27498643 - 27498498
Alignment:
| Q |
2 |
gtagcaaaggcttccaaacttgaccaaaaatcgggctacgatgccagaaatcggagcacgattttctgcattcttcaagtatcaaaattgttcttt-tgt |
100 |
Q |
| |
|
|||||||| ||||||||||||||||| |||||||||||||||| |||||||||||||||||||| |||||||||||||| |||||||||||||||| ||| |
|
|
| T |
27498643 |
gtagcaaaagcttccaaacttgaccacaaatcgggctacgatggcagaaatcggagcacgatttcctgcattcttcaagcatcaaaattgttctttctgt |
27498544 |
T |
|
| Q |
101 |
agcttcaaacttatgcaaaaacacctgaactcaactagaattacat |
146 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
27498543 |
agcttcaaacttatgcaaaaacacctgaactcatctagaattacat |
27498498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 52; E-Value: 3e-21
Query Start/End: Original strand, 29 - 146
Target Start/End: Original strand, 29434458 - 29434576
Alignment:
| Q |
29 |
aaatcgggctacgatgccagaaatcggagcacgattttc-tgcattcttcaagtatcaaaattgttcttttgtagcttcaaacttatgcaaa-aacacct |
126 |
Q |
| |
|
||||||||||||||||| | ||||||||||||||||| ||| | ||||||||||||| ||| ||||||||||||| ||||| |||||| ||||||| |
|
|
| T |
29434458 |
aaatcgggctacgatgctgaatatcggagcacgattttcctgcttccttcaagtatcaattctgt-cttttgtagcttctaacttgtgcaaacaacacct |
29434556 |
T |
|
| Q |
127 |
gaactcaactagaattacat |
146 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
29434557 |
gaactcaactagaattacat |
29434576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 48; E-Value: 9e-19
Query Start/End: Original strand, 29 - 146
Target Start/End: Original strand, 29446184 - 29446302
Alignment:
| Q |
29 |
aaatcgggctacgatgccagaaatcggagcacgatttt-ctgcattcttcaagtatcaaaattgttcttttgtagcttcaaacttatgcaaa-aacacct |
126 |
Q |
| |
|
||||||||||||||||| | |||||||||||||||| |||| | ||||||||||||| || |||||||||||||| |||||||||||| |||| || |
|
|
| T |
29446184 |
aaatcgggctacgatgctgaatatcggagcacgattttcctgcttccttcaagtatcaattctg-tcttttgtagcttctaacttatgcaaacaacaact |
29446282 |
T |
|
| Q |
127 |
gaactcaactagaattacat |
146 |
Q |
| |
|
||||||||||| |||||||| |
|
|
| T |
29446283 |
gaactcaactaaaattacat |
29446302 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 51 - 146
Target Start/End: Original strand, 27196673 - 27196768
Alignment:
| Q |
51 |
atcggagcacgattttctgcattcttcaagtatcaaaattgttcttttgtagcttcaaacttatgcaaaaacacctgaactcaactagaattacat |
146 |
Q |
| |
|
||||||| ||||||| ||| | ||| |||| ||||| || |||||||||||| ||| ||||||| ||||| ||||||||| |||| |||||||| |
|
|
| T |
27196673 |
atcggagtacgatttcttgcttccttaaagtgtcaaatctgctcttttgtagctccaaccttatgcgaaaactcctgaactccactaaaattacat |
27196768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 105; Significance: 8e-53; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 105; E-Value: 8e-53
Query Start/End: Original strand, 2 - 146
Target Start/End: Original strand, 11756516 - 11756660
Alignment:
| Q |
2 |
gtagcaaaggcttccaaacttgaccaaaaatcgggctacgatgccagaaatcggagcacgattttctgcattcttcaagtatcaaaattgttcttttgta |
101 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| | ||||||||| ||||||| ||||| ||||| |||| | |||||||||||||| ||||||||||||| |
|
|
| T |
11756516 |
gtagcaaaagcttccaaacttgaccaaaaatcagactacgatgcaagaaatcagagcatgatttcctgcttccttcaagtatcaaatttgttcttttgta |
11756615 |
T |
|
| Q |
102 |
gcttcaaacttatgcaaaaacacctgaactcaactagaattacat |
146 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11756616 |
gcttcaaacttatgcaaaaacacctgaactcaactagaattacat |
11756660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 67; Significance: 4e-30; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 67; E-Value: 4e-30
Query Start/End: Original strand, 28 - 146
Target Start/End: Original strand, 15394865 - 15394982
Alignment:
| Q |
28 |
aaaatcgggctacgatgccagaaatcggagcacgattttctgcattcttcaagtatcaaaattgttcttttgtagcttcaaacttatgcaaaaacacctg |
127 |
Q |
| |
|
|||||||||||||||||| || ||| ||||||||||| |||| | ||||||||||||| ||||||||||||||| || ||||||||| |||||||||| |
|
|
| T |
15394865 |
aaaatcgggctacgatgctagggatccgagcacgatttcctgcttctttcaagtatcaaatttgttcttttgtagcctctaacttatgc-aaaacacctg |
15394963 |
T |
|
| Q |
128 |
aactcaactagaattacat |
146 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
15394964 |
aactcaactagaattacat |
15394982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 3e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 3e-18
Query Start/End: Original strand, 92 - 145
Target Start/End: Complemental strand, 22754927 - 22754873
Alignment:
| Q |
92 |
ttcttttgtagcttcaaacttatgcaaaaacacctgaactcaac-tagaattaca |
145 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
22754927 |
ttcttttgtagcttcaaacttatgcaaaaacacctgaactcaacttagaattaca |
22754873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University