View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5684-52 (Length: 131)
Name: Solexa-NF5684-52
Description: NF5684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5684-52 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 115; Significance: 8e-59; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 115; E-Value: 8e-59
Query Start/End: Original strand, 5 - 131
Target Start/End: Original strand, 52204659 - 52204785
Alignment:
| Q |
5 |
aggtactatgcagtcaagaaagctacagctgaggatgacataattgagcagtttataagcaagcataaccttaaggtttaccgacgcatacctatttttg |
104 |
Q |
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| T |
52204659 |
aggtactatacagtcaagaaagctacagctgaggatgacataattgagcagtttataagaaagcataaccttaaggtttaccgacgcatacctatttttg |
52204758 |
T |
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| Q |
105 |
ttcgtttgaactcccgcatttattttt |
131 |
Q |
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| T |
52204759 |
ttcgtttgaactcccgcatttcttttt |
52204785 |
T |
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