View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: Solexa-NF5684-54 (Length: 141)

Name: Solexa-NF5684-54
Description: NF5684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] Solexa-NF5684-54
Solexa-NF5684-54
[»] chr4 (4 HSPs)
chr4 (4-141)||(3438650-3438785)
chr4 (4-131)||(370806-370934)
chr4 (7-77)||(1537855-1537925)
chr4 (4-38)||(8184115-8184149)
[»] chr8 (3 HSPs)
chr8 (4-137)||(32151182-32151315)
chr8 (8-140)||(17628103-17628235)
chr8 (4-112)||(28246378-28246486)
[»] chr3 (2 HSPs)
chr3 (4-131)||(514813-514940)
chr3 (4-77)||(51113866-51113939)
[»] chr6 (2 HSPs)
chr6 (4-57)||(11936360-11936413)
chr6 (4-57)||(11948340-11948393)
[»] chr7 (1 HSPs)
chr7 (8-44)||(15092240-15092276)
[»] chr1 (2 HSPs)
chr1 (5-45)||(29658982-29659022)
chr1 (5-112)||(29719009-29719116)


Alignment Details
Target: chr4 (Bit Score: 115; Significance: 9e-59; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 115; E-Value: 9e-59
Query Start/End: Original strand, 4 - 141
Target Start/End: Original strand, 3438650 - 3438785
Alignment:
Q  4 agagttgttgtgggcttttgcaactgttactggaattttgtaaaggtgtcacagtgaagggagtgaagtatgtgatgaaaaactgtacacaaccgaggga 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||    
T  3438650 agagttgttgtgggcttttgcaactgttactggaattttgtaaaggtgtcacagtgaagggagtgaagtatgtgatgaaaaactgt--acaaccgaggga 3438747  T
Q  104 ggtcaatttaggtggttgtgatcaagtgtatgctaatt 141  Q
    |||||||||| | ||||| |||||||||||||||||||    
T  3438748 ggtcaatttaaggggttgcgatcaagtgtatgctaatt 3438785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 5e-17
Query Start/End: Original strand, 4 - 131
Target Start/End: Complemental strand, 370934 - 370806
Alignment:
Q  4 agagttgttgtgggcttttgcaactgttactggaattttgtaaaggtgtcacagtgaagggagtgaagtatgtgatgaaaaactgtacacaacc-gaggg 102  Q
    ||||||||||| ||||||||||||| |||||| ||  |||| ||||| |||||  || |||||||||| ||||| |||||||||| |||||||| ||| |    
T  370934 agagttgttgtcggcttttgcaactattactgcaaaattgtgaaggtatcacaaagatgggagtgaagcatgtggtgaaaaactgcacacaacctgagag 370835  T
Q  103 aggtcaatttaggtggttgtgatcaagtg 131  Q
    || |||||||| | |||||| || |||||    
T  370834 agatcaatttaagcggttgtaataaagtg 370806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000005
Query Start/End: Original strand, 7 - 77
Target Start/End: Original strand, 1537855 - 1537925
Alignment:
Q  7 gttgttgtgggcttttgcaactgttactggaattttgtaaaggtgtcacagtgaagggagtgaagtatgtg 77  Q
    ||||| |||||||||||||||| ||||||||| ||||| |   |||||||  |||||||||||||||||||    
T  1537855 gttgtcgtgggcttttgcaacttttactggaactttgttatcttgtcacacagaagggagtgaagtatgtg 1537925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 4 - 38
Target Start/End: Original strand, 8184115 - 8184149
Alignment:
Q  4 agagttgttgtgggcttttgcaactgttactggaa 38  Q
    |||||||||||||||||||| ||||||||||||||    
T  8184115 agagttgttgtgggcttttggaactgttactggaa 8184149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 66; Significance: 1e-29; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 66; E-Value: 1e-29
Query Start/End: Original strand, 4 - 137
Target Start/End: Complemental strand, 32151315 - 32151182
Alignment:
Q  4 agagttgttgtgggcttttgcaactgttactggaattttgtaaaggtgtcacagtgaagggagtgaagtatgtgatgaaaaactgtacacaaccgaggga 103  Q
    |||||||| |||||||||||||||||||| |||  | |||||||  |||||||| |||||| |||||| |||||| ||||||||||| ||||| ||||||    
T  32151315 agagttgtagtgggcttttgcaactgttattggtgtcttgtaaatatgtcacagagaagggggtgaagcatgtgaggaaaaactgtatacaactgaggga 32151216  T
Q  104 ggtcaatttaggtggttgtgatcaagtgtatgct 137  Q
    | |||||||| | ||||||||||||||| |||||    
T  32151215 gatcaatttaaggggttgtgatcaagtgcatgct 32151182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 53; E-Value: 8e-22
Query Start/End: Original strand, 8 - 140
Target Start/End: Original strand, 17628103 - 17628235
Alignment:
Q  8 ttgttgtgggcttttgcaactgttactggaattttgtaaaggtgtcacagtgaagggagtgaagtatgtgatgaaaaactgtacacaaccgagggaggtc 107  Q
    ||||| |||||| ||| |||| ||||| ||||||||||||||||||||||  |||||||||||| ||||| |||||||||| ||||| | ||||||| ||    
T  17628103 ttgttttgggctcttgaaactattactagaattttgtaaaggtgtcacagacaagggagtgaagcatgtgttgaaaaactgcacacagctgagggagatc 17628202  T
Q  108 aatttaggtggttgtgatcaagtgtatgctaat 140  Q
    | |||| | |||||| || ||||| | ||||||    
T  17628203 agtttaaggggttgttatgaagtgaaagctaat 17628235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.0000000007
Query Start/End: Original strand, 4 - 112
Target Start/End: Original strand, 28246378 - 28246486
Alignment:
Q  4 agagttgttgtgggcttttgcaactgttactggaattttgtaaaggtgtcacagtgaagggagtgaagtatgtgatgaaaaactgtacacaaccgaggga 103  Q
    |||||||| | |||||||||||||||| |||  |||||||| ||||||||||||  ||  |||||| | ||||| |  |||| || ||||||| ||| ||    
T  28246378 agagttgtagcgggcttttgcaactgtcacttaaattttgtgaaggtgtcacagacaaatgagtgacgcatgtggttgaaaaatgcacacaactgagaga 28246477  T
Q  104 ggtcaattt 112  Q
    |||||||||    
T  28246478 ggtcaattt 28246486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 8e-19; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 8e-19
Query Start/End: Original strand, 4 - 131
Target Start/End: Original strand, 514813 - 514940
Alignment:
Q  4 agagttgttgtgggcttttgcaactgttactggaattttgtaaaggtgtcacagtgaagggagtgaagtatgtgatgaaaaactgtacacaaccgaggga 103  Q
    ||||||| ||||||||||||||||| |||||| ||  |||| ||||| |||||| || |||||||||| ||||| |||||||||| |||| || ||| ||    
T  514813 agagttgctgtgggcttttgcaactattactgcaaaattgtgaaggtatcacagagacgggagtgaagcatgtggtgaaaaactgcacacgactgagaga 514912  T
Q  104 ggtcaatttaggtggttgtgatcaagtg 131  Q
    | |||||||| | |||||| || |||||    
T  514913 gatcaatttaagaggttgtaataaagtg 514940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.0000000000008
Query Start/End: Original strand, 4 - 77
Target Start/End: Original strand, 51113866 - 51113939
Alignment:
Q  4 agagttgttgtgggcttttgcaactgttactggaattttgtaaaggtgtcacagtgaagggagtgaagtatgtg 77  Q
    |||||||||||||||||||||||||||||||| ||  |||| |   |||||||| ||||||||||||| |||||    
T  51113866 agagttgttgtgggcttttgcaactgttactgaaaaattgttaccatgtcacagagaagggagtgaagcatgtg 51113939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 4 - 57
Target Start/End: Original strand, 11936360 - 11936413
Alignment:
Q  4 agagttgttgtgggcttttgcaactgttactggaattttgtaaaggtgtcacag 57  Q
    |||||||| |||||||||||||||||| |||  |||||||| ||||||||||||    
T  11936360 agagttgtagtgggcttttgcaactgtcacttaaattttgtgaaggtgtcacag 11936413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 4 - 57
Target Start/End: Original strand, 11948340 - 11948393
Alignment:
Q  4 agagttgttgtgggcttttgcaactgttactggaattttgtaaaggtgtcacag 57  Q
    |||||||| |||||||||||||||||| |||  |||||||| ||||||||||||    
T  11948340 agagttgtagtgggcttttgcaactgtcacttaaattttgtgaaggtgtcacag 11948393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 8 - 44
Target Start/End: Original strand, 15092240 - 15092276
Alignment:
Q  8 ttgttgtgggcttttgcaactgttactggaattttgt 44  Q
    ||||||||||||||||||||| ||||| |||||||||    
T  15092240 ttgttgtgggcttttgcaactattacttgaattttgt 15092276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 5 - 45
Target Start/End: Original strand, 29658982 - 29659022
Alignment:
Q  5 gagttgttgtgggcttttgcaactgttactggaattttgta 45  Q
    |||||||||||| ||||||||| |||||||||||| |||||    
T  29658982 gagttgttgtggccttttgcaattgttactggaatgttgta 29659022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 5 - 112
Target Start/End: Original strand, 29719009 - 29719116
Alignment:
Q  5 gagttgttgtgggcttttgcaactgttactggaattttgtaaaggtgtcacagtgaagggagtgaagtatgtgatgaaaaactgtacacaaccgagggag 104  Q
    |||||||||||| ||||||||| |||||||||||  |||||    |||||||| ||| ||||||||  ||||| |  ||||||| |  |||| |||||||    
T  29719009 gagttgttgtggccttttgcaattgttactggaaagttgtatgaatgtcacagagaatggagtgaaacatgtggttcaaaactgcaagcaactgagggag 29719108  T
Q  105 gtcaattt 112  Q
     |||||||    
T  29719109 atcaattt 29719116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University