View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5684-9 (Length: 262)
Name: Solexa-NF5684-9
Description: NF5684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5684-9 |
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Alignment Details
Target: chr4 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 8 - 251
Target Start/End: Complemental strand, 2935166 - 2934926
Alignment:
| Q |
8 |
gtatttaactttaactaattgtagtattaaggatcacgatgcgatgatttaaaacattattagttaccaattgatgattagttattattaatgaggaata |
107 |
Q |
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| T |
2935166 |
gtatttaactttaactaattggagtattaaggatcacgatgcgatgatttaaaacattattagttaccaattgatgattagttatta---atgaggaata |
2935070 |
T |
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| Q |
108 |
gtgaatgaaatttacatgaatagaatcaccaagcacaactacaaaacttcctgaagaaggcttgtagcttatccattgtccatctctgctcctcctcact |
207 |
Q |
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| T |
2935069 |
ctgaatgaaatttacatgaatagaatcaccaagcacaactacaaaacttcctgaagaaggcttgtagcttatccattgtccatctttggtcatcatctct |
2934970 |
T |
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| Q |
208 |
aaaccttccacttgattttggtacaatatggtcacaaagttctt |
251 |
Q |
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| T |
2934969 |
aaaccttccacttgattttggtacaatatggtcacaaagttctt |
2934926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 101 - 244
Target Start/End: Complemental strand, 2920262 - 2920116
Alignment:
| Q |
101 |
aggaatagtgaatgaaatttacatgaatagaatcaccaagcacaactacaaaacttcctgaagaag---gcttgtagcttatccattgtccatctctgct |
197 |
Q |
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|||||| || |||| |||||||||||||||| ||||||| || | |||||||||| |||||||||| |||||||||||||||||||||||||| || | |
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| T |
2920262 |
aggaatggttaatggaatttacatgaatagagtcaccaatcatagctacaaaactgcctgaagaagaaggcttgtagcttatccattgtccatctttggt |
2920163 |
T |
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| Q |
198 |
cctcctcactaaaccttccacttgattttggtacaatatggtcacaa |
244 |
Q |
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| T |
2920162 |
catcacctctaaaccctccacttgattttggtacaatatggtcacaa |
2920116 |
T |
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