View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: Solexa-NF5700-1 (Length: 295)

Name: Solexa-NF5700-1
Description: NF5700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] Solexa-NF5700-1
Solexa-NF5700-1
[»] chr4 (12 HSPs)
chr4 (1-162)||(7615597-7615758)
chr4 (2-162)||(7606584-7606744)
chr4 (155-282)||(7615610-7615737)
chr4 (155-282)||(7606596-7606723)
chr4 (1-162)||(7637414-7637575)
chr4 (1-157)||(7628968-7629124)
chr4 (163-280)||(7637429-7637546)
chr4 (155-279)||(7628984-7629108)
chr4 (8-163)||(7655747-7655902)
chr4 (152-279)||(7655766-7655893)
chr4 (10-49)||(39098047-39098086)
chr4 (7-63)||(7633703-7633759)
[»] chr7 (5 HSPs)
chr7 (1-146)||(8935728-8935873)
chr7 (146-282)||(8935724-8935860)
chr7 (16-162)||(8910773-8910919)
chr7 (155-280)||(8910794-8910919)
chr7 (7-105)||(8918826-8918924)


Alignment Details
Target: chr4 (Bit Score: 158; Significance: 4e-84; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 1 - 162
Target Start/End: Original strand, 7615597 - 7615758
Alignment:
Q  1 cacagagcaccaaaggtgagttaaaagcgcttgtagagaagatattttgatggtaccaatctcatcattgattttcgattttagttgtacaattttctct 100  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7615597 cacagagcaccaaaggtgagttaaaagcacttgtagagaagatattttgatggtaccaatctcatcattgattttcgattttagttgtacaattttctct 7615696  T
Q  101 tttgtgaaatgaaatatcctatttgataaacaaagtttttcctcattagacgacgaaaaact 162  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7615697 tttgtgaaatgaaatatcctatttgataaacaaagtttttcctcattagacgacgaaaaact 7615758  T

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Target: chr4; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 2 - 162
Target Start/End: Original strand, 7606584 - 7606744
Alignment:
Q  2 acagagcaccaaaggtgagttaaaagcgcttgtagagaagatattttgatggtaccaatctcatcattgattttcgattttagttgtacaattttctctt 101  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| ||||||||||||||||| |||||||  |||||||| |    
T  7606584 acagagcaccaaaggtgagttaaaagcgcttgtagagaagttattttgatggtaccaacctcttcattgattttcgatttcagttgtatgattttctcct 7606683  T
Q  102 ttgtgaaatgaaatatcctatttgataaacaaagtttttcctcattagacgacgaaaaact 162  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||    
T  7606684 ttgtgaaatgaaataacctatttgataaacaaagtttttcctcattagacgatgaaaaact 7606744  T

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Target: chr4; HSP #3
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 155 - 282
Target Start/End: Complemental strand, 7615737 - 7615610
Alignment:
Q  155 gaaaaactttgtttatcaaataggatatttcatttcacaaaagagaaaattgtacaactaaaatcgaaaatcaatgatgagattggtaccatcaaaatat 254  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7615737 gaaaaactttgtttatcaaataggatatttcatttcacaaaagagaaaattgtacaactaaaatcgaaaatcaatgatgagattggtaccatcaaaatat 7615638  T
Q  255 cttctctacaagcgcttttaactcacct 282  Q
    |||||||||||| |||||||||||||||    
T  7615637 cttctctacaagtgcttttaactcacct 7615610  T

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Target: chr4; HSP #4
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 155 - 282
Target Start/End: Complemental strand, 7606723 - 7606596
Alignment:
Q  155 gaaaaactttgtttatcaaataggatatttcatttcacaaaagagaaaattgtacaactaaaatcgaaaatcaatgatgagattggtaccatcaaaatat 254  Q
    |||||||||||||||||||||||| |||||||||||||||| ||||||||  ||||||| ||||||||||||||||| ||| |||||||||||||||||     
T  7606723 gaaaaactttgtttatcaaataggttatttcatttcacaaaggagaaaatcatacaactgaaatcgaaaatcaatgaagaggttggtaccatcaaaataa 7606624  T
Q  255 cttctctacaagcgcttttaactcacct 282  Q
    ||||||||||||||||||||||||||||    
T  7606623 cttctctacaagcgcttttaactcacct 7606596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 1 - 162
Target Start/End: Original strand, 7637414 - 7637575
Alignment:
Q  1 cacagagcaccaaaggtgagttaaaagcgcttgtagagaagatattttgatggtaccaatctcatcattgattttcgattttagttgtacaattttctct 100  Q
    |||| ||||||||| |||||||||||| ||||||||||||||||||||| |||| || ||||| || |||||||||||||| | |||||  ||||||||     
T  7637414 cacatagcaccaaacgtgagttaaaagtgcttgtagagaagatattttggtggtgccgatctcttcgttgattttcgatttcaattgtaggattttctcc 7637513  T
Q  101 tttgtgaaatgaaatatcctatttgataaacaaagtttttcctcattagacgacgaaaaact 162  Q
    |||||||||||||||| ||||||||||||||||  ||||||||||||| |||| ||||||||    
T  7637514 tttgtgaaatgaaataacctatttgataaacaatatttttcctcattaaacgatgaaaaact 7637575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 1 - 157
Target Start/End: Original strand, 7628968 - 7629124
Alignment:
Q  1 cacagagcaccaaaggtgagttaaaagcgcttgtagagaagatattttgatggtaccaatctcatcattgattttcgattttagttgtacaattttctct 100  Q
    |||| |||||||||  ||||||| |||||||||||||||||||||||||||| |||||||||| |  |||||||| ||||| ||||| || ||||||||     
T  7628968 cacatagcaccaaacatgagttagaagcgcttgtagagaagatattttgatgttaccaatctctttgttgatttttgatttcagttgcacgattttctcc 7629067  T
Q  101 tttgtgaaatgaaatatcctatttgataaacaaagtttttcctcattagacgacgaa 157  Q
    ||||| || || ||||  ||||||||||||||||||||||| |||||||| ||||||    
T  7629068 tttgtaaagtggaataatctatttgataaacaaagtttttcatcattagatgacgaa 7629124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 163 - 280
Target Start/End: Complemental strand, 7637546 - 7637429
Alignment:
Q  163 ttgtttatcaaataggatatttcatttcacaaaagagaaaattgtacaactaaaatcgaaaatcaatgatgagattggtaccatcaaaatatcttctcta 262  Q
    |||||||||||||||| |||||||||||||||| ||||||||  ||||| | |||||||||||||| || ||||| || |||| ||||||||||||||||    
T  7637546 ttgtttatcaaataggttatttcatttcacaaaggagaaaatcctacaattgaaatcgaaaatcaacgaagagatcggcaccaccaaaatatcttctcta 7637447  T
Q  263 caagcgcttttaactcac 280  Q
    ||||| ||||||||||||    
T  7637446 caagcacttttaactcac 7637429  T

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Target: chr4; HSP #8
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 155 - 279
Target Start/End: Complemental strand, 7629108 - 7628984
Alignment:
Q  155 gaaaaactttgtttatcaaataggatatttcatttcacaaaagagaaaattgtacaactaaaatcgaaaatcaatgatgagattggtaccatcaaaatat 254  Q
    |||||||||||||||||||||||  |||| || || ||||| |||||||| || ||||| ||||| ||||||||  | |||||||||| |||||||||||    
T  7629108 gaaaaactttgtttatcaaatagattattccactttacaaaggagaaaatcgtgcaactgaaatcaaaaatcaacaaagagattggtaacatcaaaatat 7629009  T
Q  255 cttctctacaagcgcttttaactca 279  Q
    ||||||||||||||||| |||||||    
T  7629008 cttctctacaagcgcttctaactca 7628984  T

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Target: chr4; HSP #9
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 8 - 163
Target Start/End: Complemental strand, 7655902 - 7655747
Alignment:
Q  8 caccaaaggtgagttaaaagcgcttgtagagaagatattttgatggtaccaatctcatcattgattttcgattttagttgtacaattttctcttttgtga 107  Q
    |||||||| ||||||||||||||||||||||||||||||||  ||||| |||||||  |||||| ||||||||| ||||| |  |||||||  ||||| |    
T  7655902 caccaaagatgagttaaaagcgcttgtagagaagatatttttttggtatcaatctctgcattgactttcgatttcagttgcatgattttcttctttgtaa 7655803  T
Q  108 aatgaaatatcctatttgataaacaaagtttttcctcattagacgacgaaaaactt 163  Q
    | ||||||||||| | ||||| | | |||||||| |||| ||| ||||||||||||    
T  7655802 agtgaaatatcctctctgatagaaagagtttttcgtcatcagaagacgaaaaactt 7655747  T

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Target: chr4; HSP #10
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 152 - 279
Target Start/End: Original strand, 7655766 - 7655893
Alignment:
Q  152 gacgaaaaactttgtttatcaaataggatatttcatttcacaaaagagaaaattgtacaactaaaatcgaaaatcaatgatgagattggtaccatcaaaa 251  Q
    ||||||||||| | | ||||| | ||||||||||| || |||||  |||||||  | ||||| ||||||||| ||||||  ||||||| |||||  ||||    
T  7655766 gacgaaaaactctttctatcagagaggatatttcactttacaaagaagaaaatcatgcaactgaaatcgaaagtcaatgcagagattgataccaaaaaaa 7655865  T
Q  252 tatcttctctacaagcgcttttaactca 279  Q
    ||||||||||||||||||||||||||||    
T  7655866 tatcttctctacaagcgcttttaactca 7655893  T

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Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 10 - 49
Target Start/End: Original strand, 39098047 - 39098086
Alignment:
Q  10 ccaaaggtgagttaaaagcgcttgtagagaagatattttg 49  Q
    |||||||||||||||||| ||||||| |||||||||||||    
T  39098047 ccaaaggtgagttaaaagtgcttgtaaagaagatattttg 39098086  T

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Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 7 - 63
Target Start/End: Original strand, 7633703 - 7633759
Alignment:
Q  7 gcaccaaaggtgagttaaaagcgcttgtagagaagatattttgatggtaccaatctc 63  Q
    |||||||||||||| ||||||||| | |||  || ||||||||| ||||||||||||    
T  7633703 gcaccaaaggtgagctaaaagcgcatataggaaatatattttgacggtaccaatctc 7633759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 102; Significance: 1e-50; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 1 - 146
Target Start/End: Complemental strand, 8935873 - 8935728
Alignment:
Q  1 cacagagcaccaaaggtgagttaaaagcgcttgtagagaagatattttgatggtaccaatctcatcattgattttcgattttagttgtacaattttctct 100  Q
    |||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||  |||| || ||||| |||||||||    
T  8935873 cacacagcaccaaaggtgagttaaaggcgcttgtagagaagatattttgatggtaccaatctcttcattgatttttaatttcagctgtacgattttctct 8935774  T
Q  101 tttgtgaaatgaaatatcctatttgataaacaaagtttttcctcat 146  Q
    ||||||||||||||||| |||||||| |||||||||||||| ||||    
T  8935773 tttgtgaaatgaaatattctatttgagaaacaaagtttttcatcat 8935728  T

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Target: chr7; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 146 - 282
Target Start/End: Original strand, 8935724 - 8935860
Alignment:
Q  146 ttagacgacgaaaaactttgtttatcaaataggatatttcatttcacaaaagagaaaattgtacaactaaaatcgaaaatcaatgatgagattggtacca 245  Q
    ||||| || |||||||||||||| |||||||| |||||||||||||||||||||||||| ||||| || ||||  ||||||||||| |||||||||||||    
T  8935724 ttagatgatgaaaaactttgtttctcaaatagaatatttcatttcacaaaagagaaaatcgtacagctgaaattaaaaatcaatgaagagattggtacca 8935823  T
Q  246 tcaaaatatcttctctacaagcgcttttaactcacct 282  Q
    |||||||||||||||||||||||| ||||||||||||    
T  8935824 tcaaaatatcttctctacaagcgcctttaactcacct 8935860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 16 - 162
Target Start/End: Complemental strand, 8910919 - 8910773
Alignment:
Q  16 gtgagttaaaagcgcttgtagagaagatattttgatggtaccaatctcatcattgattttcgattttagttgtacaattttctcttttgtgaaatgaaat 115  Q
    |||||||||||| ||||||||||||||||||||| |||| || ||||| || |||||||||||||| | |||||  |||||||| |||||||||||||||    
T  8910919 gtgagttaaaagtgcttgtagagaagatattttggtggtgccgatctcttcgttgattttcgatttcaattgtaggattttctcctttgtgaaatgaaat 8910820  T
Q  116 atcctatttgataaacaaagtttttcctcattagacgacgaaaaact 162  Q
    | |||||||||||||||| ||||||||||||||  ||| ||||||||    
T  8910819 aacctatttgataaacaatgtttttcctcattaagcgatgaaaaact 8910773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 155 - 280
Target Start/End: Original strand, 8910794 - 8910919
Alignment:
Q  155 gaaaaactttgtttatcaaataggatatttcatttcacaaaagagaaaattgtacaactaaaatcgaaaatcaatgatgagattggtaccatcaaaatat 254  Q
    ||||||| |||||||||||||||| |||||||||||||||| ||||||||  ||||| | |||||||||||||| || ||||| || |||| ||||||||    
T  8910794 gaaaaacattgtttatcaaataggttatttcatttcacaaaggagaaaatcctacaattgaaatcgaaaatcaacgaagagatcggcaccaccaaaatat 8910893  T
Q  255 cttctctacaagcgcttttaactcac 280  Q
    ||||||||||||| ||||||||||||    
T  8910894 cttctctacaagcacttttaactcac 8910919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 7 - 105
Target Start/End: Complemental strand, 8918924 - 8918826
Alignment:
Q  7 gcaccaaaggtgagttaaaagcgcttgtagagaagatattttgatggtaccaatctcatcattgattttcgattttagttgtacaattttctcttttgt 105  Q
    |||||||||||||| ||||||||| | |||  || ||||||||| ||||||||||||    |||| ||| ||||| |||||||  |||||||| |||||    
T  8918924 gcaccaaaggtgagctaaaagcgcatataggaaatatattttgacggtaccaatctctgtgttgacttttgatttcagttgtaagattttctcctttgt 8918826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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