View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: Solexa-NF5700-10 (Length: 140)
Name: Solexa-NF5700-10
Description: NF5700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5700-10 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 83; Significance: 1e-39; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 83; E-Value: 1e-39
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 3904515 - 3904613
Alignment:
| Q |
1 |
ccaatttcttttgcttaacaaaatatagcatattaaaaagcattagggatctcatggggtgaatctcaattgatttcaacatttagtggttggatttgg |
99 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| |||||||||| |||| |
|
|
| T |
3904515 |
ccaatttcttttgcttaacaaaatatagcatattaaaaagcattagggatctcatgggttgaatgtcaattgatttcaacattcagtggttggaattgg |
3904613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 56 - 99
Target Start/End: Original strand, 3902062 - 3902105
Alignment:
| Q |
56 |
ggggtgaatctcaattgatttcaacatttagtggttggatttgg |
99 |
Q |
| |
|
||||||||| ||||||||||||||| |||||||||||| |||| |
|
|
| T |
3902062 |
ggggtgaatgtcaattgatttcaaccgttagtggttggaattgg |
3902105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University