View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5700-11 (Length: 139)
Name: Solexa-NF5700-11
Description: NF5700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5700-11 |
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| [»] chr6 (8 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 131; Significance: 2e-68; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 131; E-Value: 2e-68
Query Start/End: Original strand, 1 - 139
Target Start/End: Complemental strand, 2910105 - 2909967
Alignment:
| Q |
1 |
ggaaaggcgtggaaacgtggtcatctagtttatggtccaccaggaaccggaaaatctaccatgatatctgctattgcgaatttcatgaactatgacgttt |
100 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2910105 |
ggaaaggcgtggaaacgtggttatctagtttatggtccaccaggaaccggaaaatctaccatgatatctgctattgcgaatttcatgaactatgacgttt |
2910006 |
T |
|
| Q |
101 |
atgatcttgaattaacaattgtcaaggataactatgagt |
139 |
Q |
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|||||||| |||||||||||||||||||||||||||||| |
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| T |
2910005 |
atgatcttcaattaacaattgtcaaggataactatgagt |
2909967 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 91; E-Value: 2e-44
Query Start/End: Original strand, 1 - 139
Target Start/End: Original strand, 2842239 - 2842377
Alignment:
| Q |
1 |
ggaaaggcgtggaaacgtggtcatctagtttatggtccaccaggaaccggaaaatctaccatgatatctgctattgcgaatttcatgaactatgacgttt |
100 |
Q |
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||||| || |||||||||||| ||||| ||| |||||| ||||||||||| ||||||||||||||||| |||||||| ||||||||||||||||| || | |
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| T |
2842239 |
ggaaaagcttggaaacgtggttatctactttttggtcctccaggaaccggtaaatctaccatgatatcggctattgctaatttcatgaactatgatgtgt |
2842338 |
T |
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| Q |
101 |
atgatcttgaattaacaattgtcaaggataactatgagt |
139 |
Q |
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|||||||||||||||||||||||||||||||| |||||| |
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| T |
2842339 |
atgatcttgaattaacaattgtcaaggataacaatgagt |
2842377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 91; E-Value: 2e-44
Query Start/End: Original strand, 1 - 139
Target Start/End: Complemental strand, 2860690 - 2860552
Alignment:
| Q |
1 |
ggaaaggcgtggaaacgtggtcatctagtttatggtccaccaggaaccggaaaatctaccatgatatctgctattgcgaatttcatgaactatgacgttt |
100 |
Q |
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|||||||| |||||||| ||| ||||| | ||||||||||||||||| || |||||||||||||||||||||||||| |||||||||||||| ||||| | |
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| T |
2860690 |
ggaaaggcttggaaacggggttatctactctatggtccaccaggaactgggaaatctaccatgatatctgctattgcaaatttcatgaactacgacgtgt |
2860591 |
T |
|
| Q |
101 |
atgatcttgaattaacaattgtcaaggataactatgagt |
139 |
Q |
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|||||||||||||||||| ||||||||||||| |||||| |
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| T |
2860590 |
atgatcttgaattaacaactgtcaaggataacaatgagt |
2860552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 87; E-Value: 4e-42
Query Start/End: Original strand, 1 - 139
Target Start/End: Complemental strand, 2866069 - 2865931
Alignment:
| Q |
1 |
ggaaaggcgtggaaacgtggtcatctagtttatggtccaccaggaaccggaaaatctaccatgatatctgctattgcgaatttcatgaactatgacgttt |
100 |
Q |
| |
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|||||||| |||||||| ||| ||||| | ||||||||||||||||| || |||||||||||||||||||||||||| |||||||||||||| || || | |
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| T |
2866069 |
ggaaaggcttggaaacgcggttatctactctatggtccaccaggaactgggaaatctaccatgatatctgctattgcaaatttcatgaactacgatgtat |
2865970 |
T |
|
| Q |
101 |
atgatcttgaattaacaattgtcaaggataactatgagt |
139 |
Q |
| |
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|||||||||||||||||| ||||||||||||| |||||| |
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| T |
2865969 |
atgatcttgaattaacaactgtcaaggataacaatgagt |
2865931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 79; E-Value: 3e-37
Query Start/End: Original strand, 1 - 139
Target Start/End: Complemental strand, 2833381 - 2833243
Alignment:
| Q |
1 |
ggaaaggcgtggaaacgtggtcatctagtttatggtccaccaggaaccggaaaatctaccatgatatctgctattgcgaatttcatgaactatgacgttt |
100 |
Q |
| |
|
|||||||| |||||||||||| ||||| |||||||||| |||||||| ||||||||||| |||||||| ||||| || |||| |||||||||||| || | |
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| T |
2833381 |
ggaaaggcttggaaacgtggttatctactttatggtcctccaggaactggaaaatctactatgatatcagctatagcaaattacatgaactatgatgtgt |
2833282 |
T |
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| Q |
101 |
atgatcttgaattaacaattgtcaaggataactatgagt |
139 |
Q |
| |
|
|||||||||||||||||| ||| ||||||||| |||||| |
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| T |
2833281 |
atgatcttgaattaacaactgttaaggataacaatgagt |
2833243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 79; E-Value: 3e-37
Query Start/End: Original strand, 1 - 139
Target Start/End: Complemental strand, 2885259 - 2885121
Alignment:
| Q |
1 |
ggaaaggcgtggaaacgtggtcatctagtttatggtccaccaggaaccggaaaatctaccatgatatctgctattgcgaatttcatgaactatgacgttt |
100 |
Q |
| |
|
|||||||| |||||||| ||| ||||| ||||||||||||||||||| || ||||||||||||||||| |||||||| |||||||||||||| || || | |
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| T |
2885259 |
ggaaaggcttggaaacggggttatctactttatggtccaccaggaactgggaaatctaccatgatatcggctattgcaaatttcatgaactacgatgtat |
2885160 |
T |
|
| Q |
101 |
atgatcttgaattaacaattgtcaaggataactatgagt |
139 |
Q |
| |
|
||||||| |||||||| | ||||||||||||| |||||| |
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| T |
2885159 |
atgatctagaattaaccactgtcaaggataacaatgagt |
2885121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 79; E-Value: 3e-37
Query Start/End: Original strand, 1 - 139
Target Start/End: Original strand, 14577977 - 14578115
Alignment:
| Q |
1 |
ggaaaggcgtggaaacgtggtcatctagtttatggtccaccaggaaccggaaaatctaccatgatatctgctattgcgaatttcatgaactatgacgttt |
100 |
Q |
| |
|
|||||||| |||||||| ||| || || ||| ||||| ||||||||||||||||||||||||||||| |||||||| ||||| |||||||| ||||||| |
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| T |
14577977 |
ggaaaggcttggaaacgcggttatttacttttcggtcctccaggaaccggaaaatctaccatgatatcggctattgcaaattttatgaactacgacgttt |
14578076 |
T |
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| Q |
101 |
atgatcttgaattaacaattgtcaaggataactatgagt |
139 |
Q |
| |
|
|||||||||||||||||| | ||||||||||| |||||| |
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| T |
14578077 |
atgatcttgaattaacaactatcaaggataacaatgagt |
14578115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 64; E-Value: 2e-28
Query Start/End: Original strand, 4 - 139
Target Start/End: Original strand, 2828884 - 2829019
Alignment:
| Q |
4 |
aaggcgtggaaacgtggtcatctagtttatggtccaccaggaaccggaaaatctaccatgatatctgctattgcgaatttcatgaactatgacgtttatg |
103 |
Q |
| |
|
||||| |||||||||||| ||||| ||| |||||| || ||||| ||||||||||| |||||||| |||||||| ||||||||||| ||||| || |||| |
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| T |
2828884 |
aaggcttggaaacgtggttatctactttttggtcctcctggaactggaaaatctacgatgatatcagctattgctaatttcatgaattatgatgtgtatg |
2828983 |
T |
|
| Q |
104 |
atcttgaattaacaattgtcaaggataactatgagt |
139 |
Q |
| |
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||||||| ||||||| | ||||| ||||| |||||| |
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| T |
2828984 |
atcttgagttaacaactatcaagaataacaatgagt |
2829019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 61; Significance: 1e-26; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 61; E-Value: 1e-26
Query Start/End: Original strand, 4 - 116
Target Start/End: Original strand, 1800810 - 1800922
Alignment:
| Q |
4 |
aaggcgtggaaacgtggtcatctagtttatggtccaccaggaaccggaaaatctaccatgatatctgctattgcgaatttcatgaactatgacgtttatg |
103 |
Q |
| |
|
||||| |||||||| ||| || || |||||||||| |||||||| || |||||||| |||||| | ||||| |||||||||||||||||||| ||||||| |
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| T |
1800810 |
aaggcttggaaacgcggttatttactttatggtcctccaggaacaggtaaatctactatgatagccgctatggcgaatttcatgaactatgatgtttatg |
1800909 |
T |
|
| Q |
104 |
atcttgaattaac |
116 |
Q |
| |
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||||||||||||| |
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|
| T |
1800910 |
atcttgaattaac |
1800922 |
T |
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