View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: Solexa-NF5700-14 (Length: 130)

Name: Solexa-NF5700-14
Description: NF5700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] Solexa-NF5700-14
Solexa-NF5700-14
[»] chr6 (8 HSPs)
chr6 (8-126)||(2909391-2909509)
chr6 (8-126)||(2832684-2832802)
chr6 (8-126)||(2842818-2842936)
chr6 (8-126)||(2859948-2860066)
chr6 (8-126)||(2865333-2865451)
chr6 (8-126)||(2884523-2884641)
chr6 (8-126)||(2829412-2829530)
chr6 (27-123)||(14578526-14578622)
[»] chr7 (2 HSPs)
chr7 (42-126)||(1801401-1801485)
chr7 (95-126)||(44948324-44948355)
[»] chr2 (1 HSPs)
chr2 (95-126)||(11450456-11450487)
[»] chr1 (1 HSPs)
chr1 (95-126)||(6971722-6971753)


Alignment Details
Target: chr6 (Bit Score: 115; Significance: 8e-59; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 115; E-Value: 8e-59
Query Start/End: Original strand, 8 - 126
Target Start/End: Original strand, 2909391 - 2909509
Alignment:
Q  8 ttctttgcatcctccttttcctttttctttgaaatctcaagagattgaatcaaattcttcaagcaagtctcaacatcttcaatgatcgtctttggcatca 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  2909391 ttctttgcatcctccttttcctttttctttgaaatctcaagagattgaatcaaattcttcacgcaagtctcaacatcttcaatgatcgtctttggcatca 2909490  T
Q  108 aattctcagcaacatcagc 126  Q
    |||||||||||||||||||    
T  2909491 aattctcagcaacatcagc 2909509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 79; E-Value: 2e-37
Query Start/End: Original strand, 8 - 126
Target Start/End: Original strand, 2832684 - 2832802
Alignment:
Q  8 ttctttgcatcctccttttcctttttctttgaaatctcaagagattgaatcaaattcttcaagcaagtctcaacatcttcaatgatcgtctttggcatca 107  Q
    |||||||| |||||||  ||||||||||||| |||||||||||||||||||||||||||||||||| | |||| ||||||| |||| | |||||||||||    
T  2832684 ttctttgcttcctcctcatcctttttctttgcaatctcaagagattgaatcaaattcttcaagcaactttcaaaatcttcagtgattgactttggcatca 2832783  T
Q  108 aattctcagcaacatcagc 126  Q
    |||||||||||||||||||    
T  2832784 aattctcagcaacatcagc 2832802  T

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Target: chr6; HSP #3
Raw Score: 75; E-Value: 6e-35
Query Start/End: Original strand, 8 - 126
Target Start/End: Complemental strand, 2842936 - 2842818
Alignment:
Q  8 ttctttgcatcctccttttcctttttctttgaaatctcaagagattgaatcaaattcttcaagcaagtctcaacatcttcaatgatcgtctttggcatca 107  Q
    |||||||| |||||||  ||||||||||||| |||||||||||||||||||||||||||||||||| | |||| ||||||| |||| | |||||||||||    
T  2842936 ttctttgcttcctcctcatcctttttctttgcaatctcaagagattgaatcaaattcttcaagcaactttcaaaatcttcagtgattgactttggcatca 2842837  T
Q  108 aattctcagcaacatcagc 126  Q
    |||| ||||||||||||||    
T  2842836 aattttcagcaacatcagc 2842818  T

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Target: chr6; HSP #4
Raw Score: 71; E-Value: 1e-32
Query Start/End: Original strand, 8 - 126
Target Start/End: Original strand, 2859948 - 2860066
Alignment:
Q  8 ttctttgcatcctccttttcctttttctttgaaatctcaagagattgaatcaaattcttcaagcaagtctcaacatcttcaatgatcgtctttggcatca 107  Q
    |||||||| ||||||| |||||||| ||||| ||| |||||| |||||||||||||||||||||||| ||||||||||||  || ||| |||||||||||    
T  2859948 ttctttgcttcctcctcttccttttcctttgcaatttcaagatattgaatcaaattcttcaagcaagcctcaacatcttcggtggtcgactttggcatca 2860047  T
Q  108 aattctcagcaacatcagc 126  Q
    ||||||| |||||||||||    
T  2860048 aattctcggcaacatcagc 2860066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 71; E-Value: 1e-32
Query Start/End: Original strand, 8 - 126
Target Start/End: Original strand, 2865333 - 2865451
Alignment:
Q  8 ttctttgcatcctccttttcctttttctttgaaatctcaagagattgaatcaaattcttcaagcaagtctcaacatcttcaatgatcgtctttggcatca 107  Q
    |||||||| ||||||| |||||||| ||||| ||| |||||| |||||||||||||||||||||||| ||||||||||||  || ||| |||||||||||    
T  2865333 ttctttgcttcctcctcttccttttcctttgcaatttcaagatattgaatcaaattcttcaagcaagcctcaacatcttcggtggtcgactttggcatca 2865432  T
Q  108 aattctcagcaacatcagc 126  Q
    ||||||| |||||||||||    
T  2865433 aattctcggcaacatcagc 2865451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 67; E-Value: 3e-30
Query Start/End: Original strand, 8 - 126
Target Start/End: Original strand, 2884523 - 2884641
Alignment:
Q  8 ttctttgcatcctccttttcctttttctttgaaatctcaagagattgaatcaaattcttcaagcaagtctcaacatcttcaatgatcgtctttggcatca 107  Q
    |||||||| ||||||| |||||||| ||||| ||| |||||| |||||||||||||||||||||||| |||| |||||||  || ||| |||||||||||    
T  2884523 ttctttgcttcctcctcttccttttcctttgcaatttcaagatattgaatcaaattcttcaagcaagactcagcatcttcggtggtcgactttggcatca 2884622  T
Q  108 aattctcagcaacatcagc 126  Q
    ||||||| |||||||||||    
T  2884623 aattctcggcaacatcagc 2884641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 59; E-Value: 2e-25
Query Start/End: Original strand, 8 - 126
Target Start/End: Complemental strand, 2829530 - 2829412
Alignment:
Q  8 ttctttgcatcctccttttcctttttctttgaaatctcaagagattgaatcaaattcttcaagcaagtctcaacatcttcaatgatcgtctttggcatca 107  Q
    |||||||| |||||||  ||||||||||||| | |||||||||||||||||||| ||||||| ||||| |||| |||||||   || | |||||||||||    
T  2829530 ttctttgcttcctcctcatcctttttctttgcattctcaagagattgaatcaaactcttcaaacaagtttcaaaatcttcatcaattgactttggcatca 2829431  T
Q  108 aattctcagcaacatcagc 126  Q
    |||| ||||||||||||||    
T  2829430 aattttcagcaacatcagc 2829412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 53; E-Value: 8e-22
Query Start/End: Original strand, 27 - 123
Target Start/End: Complemental strand, 14578622 - 14578526
Alignment:
Q  27 cctttttctttgaaatctcaagagattgaatcaaattcttcaagcaagtctcaacatcttcaatgatcgtctttggcatcaaattctcagcaacatc 123  Q
    |||||||||||| | |||||||||||||||||||||||||||||||||| |||| |||||||   || |  |||||||||||||| |||||||||||    
T  14578622 cctttttctttgcattctcaagagattgaatcaaattcttcaagcaagtttcaagatcttcagcaattgattttggcatcaaattttcagcaacatc 14578526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000001
Query Start/End: Original strand, 42 - 126
Target Start/End: Complemental strand, 1801485 - 1801401
Alignment:
Q  42 tctcaagagattgaatcaaattcttcaagcaagtctcaacatcttcaatgatcgtctttggcatcaaattctcagcaacatcagc 126  Q
    ||||||| | |||||||||||||||||| | |||||| ||||||||| | |  | ||| ||||||||||||||||||||||||||    
T  1801485 tctcaagtgcttgaatcaaattcttcaaactagtctcgacatcttcattcacagacttaggcatcaaattctcagcaacatcagc 1801401  T

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Target: chr7; HSP #2
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 95 - 126
Target Start/End: Original strand, 44948324 - 44948355
Alignment:
Q  95 gtctttggcatcaaattctcagcaacatcagc 126  Q
    |||||||||||||||| |||||||||||||||    
T  44948324 gtctttggcatcaaatgctcagcaacatcagc 44948355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 28; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 95 - 126
Target Start/End: Complemental strand, 11450487 - 11450456
Alignment:
Q  95 gtctttggcatcaaattctcagcaacatcagc 126  Q
    |||||||||||||||| |||||||||||||||    
T  11450487 gtctttggcatcaaatgctcagcaacatcagc 11450456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 28; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 95 - 126
Target Start/End: Complemental strand, 6971753 - 6971722
Alignment:
Q  95 gtctttggcatcaaattctcagcaacatcagc 126  Q
    |||||||||||||||| |||||||||||||||    
T  6971753 gtctttggcatcaaatgctcagcaacatcagc 6971722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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