View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: Solexa-NF5700-16 (Length: 122)

Name: Solexa-NF5700-16
Description: NF5700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] Solexa-NF5700-16
Solexa-NF5700-16
[»] chr4 (9 HSPs)
chr4 (34-118)||(17256540-17256624)
chr4 (34-114)||(19729778-19729858)
chr4 (20-114)||(3029978-3030071)
chr4 (44-118)||(30029479-30029553)
chr4 (44-118)||(30045748-30045822)
chr4 (20-118)||(54131774-54131872)
chr4 (34-86)||(24426284-24426336)
chr4 (20-118)||(17221092-17221189)
chr4 (53-118)||(30059479-30059544)
[»] chr1 (5 HSPs)
chr1 (34-118)||(17611146-17611230)
chr1 (38-118)||(13059952-13060033)
chr1 (20-117)||(51051845-51051939)
chr1 (20-84)||(19475785-19475849)
chr1 (47-118)||(41072828-41072901)
[»] scaffold0839 (1 HSPs)
scaffold0839 (34-114)||(4350-4432)
[»] chr5 (3 HSPs)
chr5 (20-118)||(33642109-33642207)
chr5 (20-118)||(13610627-13610725)
chr5 (20-114)||(30649487-30649581)
[»] chr3 (10 HSPs)
chr3 (34-118)||(19250626-19250710)
chr3 (34-111)||(41540979-41541056)
chr3 (35-118)||(34733574-34733656)
chr3 (20-113)||(10437880-10437975)
chr3 (35-97)||(9349594-9349656)
chr3 (34-114)||(13612339-13612419)
chr3 (20-84)||(36660543-36660607)
chr3 (38-118)||(30653380-30653459)
chr3 (20-120)||(36981018-36981120)
chr3 (20-120)||(37006457-37006559)
[»] chr2 (3 HSPs)
chr2 (20-118)||(28143014-28143112)
chr2 (34-120)||(735000-735087)
chr2 (34-86)||(25851129-25851181)
[»] scaffold0578 (1 HSPs)
scaffold0578 (20-84)||(6638-6702)
[»] chr7 (2 HSPs)
chr7 (91-122)||(394218-394249)
chr7 (40-84)||(36029613-36029657)
[»] scaffold0638 (1 HSPs)
scaffold0638 (20-118)||(3384-3482)
[»] chr6 (2 HSPs)
chr6 (34-118)||(7339281-7339362)
chr6 (20-118)||(29027727-29027825)
[»] scaffold1797 (1 HSPs)
scaffold1797 (20-89)||(833-902)


Alignment Details
Target: chr4 (Bit Score: 57; Significance: 3e-24; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 3e-24
Query Start/End: Original strand, 34 - 118
Target Start/End: Original strand, 17256540 - 17256624
Alignment:
Q  34 tatacaattgtcgtattacttaaataaaaatcttctcgacatgaaataaaatataatttgattttccaattaatgatttttgttt 118  Q
    ||||||||||| |||||||||||||||||||||| ||| |||||||||||||||||  |||||||| ||||||||||| ||||||    
T  17256540 tatacaattgttgtattacttaaataaaaatcttatcgtcatgaaataaaatataacatgattttctaattaatgattattgttt 17256624  T

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Target: chr4; HSP #2
Raw Score: 49; E-Value: 2e-19
Query Start/End: Original strand, 34 - 114
Target Start/End: Original strand, 19729778 - 19729858
Alignment:
Q  34 tatacaattgtcgtattacttaaataaaaatcttctcgacatgaaataaaatataatttgattttccaattaatgattttt 114  Q
    ||||| |||||||||| ||| |||||| |||||||||| ||||||||||| ||||| ||||||||| ||||||||||||||    
T  19729778 tatacgattgtcgtatcactaaaataataatcttctcgtcatgaaataaactataacttgattttctaattaatgattttt 19729858  T

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Target: chr4; HSP #3
Raw Score: 43; E-Value: 7e-16
Query Start/End: Original strand, 20 - 114
Target Start/End: Original strand, 3029978 - 3030071
Alignment:
Q  20 taaattaataaacgtatacaattgtcgtattacttaaataaaaatcttctcgacatgaaataaaatataatttgattttccaattaatgattttt 114  Q
    ||||||| ||||  ||||||||||| ||||||||||||||||||| |||||| |||||| ||||||||||||  ||||   ||||||||||||||    
T  3029978 taaattagtaaaattatacaattgttgtattacttaaataaaaat-ttctcgtcatgaagtaaaatataattgaatttcttaattaatgattttt 3030071  T

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Target: chr4; HSP #4
Raw Score: 43; E-Value: 7e-16
Query Start/End: Original strand, 44 - 118
Target Start/End: Complemental strand, 30029553 - 30029479
Alignment:
Q  44 tcgtattacttaaataaaaatcttctcgacatgaaataaaatataatttgattttccaattaatgatttttgttt 118  Q
    |||| ||||||||||||||||||||||| ||||||||||||||||| |  |||| | || |||||||||||||||    
T  30029553 tcgtgttacttaaataaaaatcttctcgtcatgaaataaaatataactgaatttcctaactaatgatttttgttt 30029479  T

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Target: chr4; HSP #5
Raw Score: 43; E-Value: 7e-16
Query Start/End: Original strand, 44 - 118
Target Start/End: Complemental strand, 30045822 - 30045748
Alignment:
Q  44 tcgtattacttaaataaaaatcttctcgacatgaaataaaatataatttgattttccaattaatgatttttgttt 118  Q
    |||| ||||||||||||||||||||||| ||||||||||||||||| |  |||| | || |||||||||||||||    
T  30045822 tcgtgttacttaaataaaaatcttctcgtcatgaaataaaatataactgaatttcctaactaatgatttttgttt 30045748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 7e-16
Query Start/End: Original strand, 20 - 118
Target Start/End: Original strand, 54131774 - 54131872
Alignment:
Q  20 taaattaataaacgtatacaattgtcgtattacttaaataaaaatcttctcgacatgaaataaaatataatttgattttccaattaatgatttttgttt 118  Q
    ||||||||||||  ||||||||||| ||  ||||| || || |||||||||  ||||||||||||||||| |  |||||| ||||||||||||||||||    
T  54131774 taaattaataaaaatatacaattgttgtggtacttgaaaaataatcttctcttcatgaaataaaatataactgaattttctaattaatgatttttgttt 54131872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 34 - 86
Target Start/End: Original strand, 24426284 - 24426336
Alignment:
Q  34 tatacaattgtcgtattacttaaataaaaatcttctcgacatgaaataaaata 86  Q
    ||||||||| ||| |||||||||||||||||||||||  ||||||||||||||    
T  24426284 tatacaattatcgcattacttaaataaaaatcttctcttcatgaaataaaata 24426336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 20 - 118
Target Start/End: Complemental strand, 17221189 - 17221092
Alignment:
Q  20 taaattaataaacgtatacaattgtcgtattacttaaataaaaatcttctcgacatgaaataaaatataatttgattttccaattaatgatttttgttt 118  Q
    ||||||| ||||  ||||||||| | |||| |||||| |||| ||||||||  ||| ||||||||||||| | |||||   ||||||||||||||||||    
T  17221189 taaattagtaaagttatacaatttttgtat-acttaactaaacatcttctcatcataaaataaaatataactggatttattaattaatgatttttgttt 17221092  T

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Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 53 - 118
Target Start/End: Complemental strand, 30059544 - 30059479
Alignment:
Q  53 ttaaataaaaatcttctcgacatgaaataaaatataatttgattttccaattaatgatttttgttt 118  Q
    ||||||||||||||||| | ||||||||| |||||||    |||| | ||||||||||||||||||    
T  30059544 ttaaataaaaatcttcttgtcatgaaatataatataacggaatttcctaattaatgatttttgttt 30059479  T

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Target: chr1 (Bit Score: 57; Significance: 3e-24; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 3e-24
Query Start/End: Original strand, 34 - 118
Target Start/End: Original strand, 17611146 - 17611230
Alignment:
Q  34 tatacaattgtcgtattacttaaataaaaatcttctcgacatgaaataaaatataatttgattttccaattaatgatttttgttt 118  Q
    ||||||||||||||| |||||||||||||||||||||  ||||||||||||||||| | ||||| | ||||||||||||||||||    
T  17611146 tatacaattgtcgtaatacttaaataaaaatcttctcttcatgaaataaaatataactagatttcctaattaatgatttttgttt 17611230  T

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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.0000000000006
Query Start/End: Original strand, 38 - 118
Target Start/End: Complemental strand, 13060033 - 13059952
Alignment:
Q  38 caattgtcgtattacttaaataaaaatc-ttctcgacatgaaataaaatataatttgattttccaattaatgatttttgttt 118  Q
    ||||||||||| ||||||||||||||   |||||  ||||||||||||||||||| ||||| | |||||| |||||||||||    
T  13060033 caattgtcgtagtacttaaataaaaaaaattctcttcatgaaataaaatataattggatttcctaattaaagatttttgttt 13059952  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 20 - 117
Target Start/End: Complemental strand, 51051939 - 51051845
Alignment:
Q  20 taaattaataaacgtatacaattgtcgtattacttaaataaaaatcttctcgacatgaaataaaatataatttgattttccaattaatgatttttgtt 117  Q
    ||||||| ||||  |||| |||||||| |||||| |||||||||||||||   |||| |||||||||||| |  |||| | |||||||||||||||||    
T  51051939 taaattagtaaaattatataattgtcgcattactcaaataaaaatcttct---catggaataaaatataactgaatttcctaattaatgatttttgtt 51051845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.0000000006
Query Start/End: Original strand, 20 - 84
Target Start/End: Original strand, 19475785 - 19475849
Alignment:
Q  20 taaattaataaacgtatacaattgtcgtattacttaaataaaaatcttctcgacatgaaataaaa 84  Q
    ||||||| ||||  ||||| | || ||||||||||||||||||| ||||||| ||||||||||||    
T  19475785 taaattagtaaaattatacgactgccgtattacttaaataaaaaacttctcgtcatgaaataaaa 19475849  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 47 - 118
Target Start/End: Complemental strand, 41072901 - 41072828
Alignment:
Q  47 tattacttaaataaaaatcttctcgacatgaaataaaa--tataatttgattttccaattaatgatttttgttt 118  Q
    |||||| || ||||||||||||||  ||||||||||||  ||||||| |||||   ||||||||||||||||||    
T  41072901 tattacgtagataaaaatcttctcatcatgaaataaaatatataattggatttcttaattaatgatttttgttt 41072828  T

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Target: scaffold0839 (Bit Score: 52; Significance: 3e-21; HSPs: 1)
Name: scaffold0839
Description:

Target: scaffold0839; HSP #1
Raw Score: 52; E-Value: 3e-21
Query Start/End: Original strand, 34 - 114
Target Start/End: Complemental strand, 4432 - 4350
Alignment:
Q  34 tatacaattgtcgtattacttaaataaaaatcttc--tcgacatgaaataaaatataatttgattttccaattaatgattttt 114  Q
    ||||||||||||||||||||||||| |||||||||  ||| ||||||||||||||||| | ||||||| ||||||||||||||    
T  4432 tatacaattgtcgtattacttaaatgaaaatcttcaatcgtcatgaaataaaatataaatggattttctaattaatgattttt 4350  T

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Target: chr5 (Bit Score: 47; Significance: 3e-18; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 3e-18
Query Start/End: Original strand, 20 - 118
Target Start/End: Original strand, 33642109 - 33642207
Alignment:
Q  20 taaattaataaacgtatacaattgtcgtattacttaaataaaaatcttctcgacatgaaataaaatataatttgattttccaattaatgatttttgttt 118  Q
    ||||||||||||  ||||||||||| ||  ||||| || || |||||||||  ||||||||||||||||| | ||||||| ||||||||||||||||||    
T  33642109 taaattaataaaaatatacaattgttgtggtacttgaaaaataatcttctcttcatgaaataaaatataactggattttctaattaatgatttttgttt 33642207  T

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Target: chr5; HSP #2
Raw Score: 43; E-Value: 7e-16
Query Start/End: Original strand, 20 - 118
Target Start/End: Original strand, 13610627 - 13610725
Alignment:
Q  20 taaattaataaacgtatacaattgtcgtattacttaaataaaaatcttctcgacatgaaataaaatataatttgattttccaattaatgatttttgttt 118  Q
    ||||||||||||  ||||||||||| ||  ||||| || || |||||||||  ||||||||||||||||| |  |||||| ||||||||||||||||||    
T  13610627 taaattaataaaaatatacaattgttgtggtacttgaaaaataatcttctcttcatgaaataaaatataactgaattttctaattaatgatttttgttt 13610725  T

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Target: chr5; HSP #3
Raw Score: 43; E-Value: 7e-16
Query Start/End: Original strand, 20 - 114
Target Start/End: Complemental strand, 30649581 - 30649487
Alignment:
Q  20 taaattaataaacgtatacaattgtcgtattacttaaataaaaatcttctcgacatgaaataaaatataatttgattttccaattaatgattttt 114  Q
    ||||||| ||||  |||||||||||| || ||||||||||||||  |||| | ||||||||||||||||| | ||||||| |||||||| |||||    
T  30649581 taaattagtaaaactatacaattgtcatagtacttaaataaaaaatttcttgtcatgaaataaaatataactcgattttctaattaatggttttt 30649487  T

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Target: chr3 (Bit Score: 45; Significance: 4e-17; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 4e-17
Query Start/End: Original strand, 34 - 118
Target Start/End: Original strand, 19250626 - 19250710
Alignment:
Q  34 tatacaattgtcgtattacttaaataaaaatcttctcgacatgaaataaaatataatttgattttccaattaatgatttttgttt 118  Q
    ||||||||| ||||||||||||||||||| ||||||||  ||||| |||||||||  | ||||| | ||||||||||||||||||    
T  19250626 tatacaattttcgtattacttaaataaaactcttctcgttatgaagtaaaatatatctggatttcctaattaatgatttttgttt 19250710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000003
Query Start/End: Original strand, 34 - 111
Target Start/End: Original strand, 41540979 - 41541056
Alignment:
Q  34 tatacaattgtcgtattacttaaataaaaatcttctcgacatgaaataaaatataatttgattttccaattaatgatt 111  Q
    ||||||||||| |||||||||||||||||||||||||| |||||||| ||||| || |  |||| | |||||||||||    
T  41540979 tatacaattgttgtattacttaaataaaaatcttctcgtcatgaaattaaataaaactgaatttcctaattaatgatt 41541056  T

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Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.00000000000004
Query Start/End: Original strand, 35 - 118
Target Start/End: Original strand, 34733574 - 34733656
Alignment:
Q  35 atacaattgtcgtattacttaaataaaaatcttctcgacatgaaataaaatataatttgattttccaattaatgatttttgttt 118  Q
    |||||||| ||||||||||||||||||||| |||||  ||||||||||||||||  |  |||||  ||||||||||||||||||    
T  34733574 atacaattatcgtattacttaaataaaaat-ttctcatcatgaaataaaatatatctgaattttataattaatgatttttgttt 34733656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 20 - 113
Target Start/End: Complemental strand, 10437975 - 10437880
Alignment:
Q  20 taaattaataaacgtatacaattgtcgtattacttaaataaaaatcttc--tcgacatgaaataaaatataatttgattttccaattaatgatttt 113  Q
    ||||||| ||||  ||||||||||||||||||||||||  |||| ||||  ||  ||||||||||||||||  | ||||||| |||||||||||||    
T  10437975 taaattagtaaaattatacaattgtcgtattacttaaacgaaaaccttcaatcttcatgaaataaaatatatatggattttctaattaatgatttt 10437880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.00000000004
Query Start/End: Original strand, 35 - 97
Target Start/End: Original strand, 9349594 - 9349656
Alignment:
Q  35 atacaattgtcgtattacttaaataaaaatcttctcgacatgaaataaaatataatttgattt 97  Q
    ||||||||||||||||| |||| |||||||||||||  | |||||| |||||||||| |||||    
T  9349594 atacaattgtcgtattagttaagtaaaaatcttctcatcgtgaaatcaaatataattggattt 9349656  T

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Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.0000000006
Query Start/End: Original strand, 34 - 114
Target Start/End: Original strand, 13612339 - 13612419
Alignment:
Q  34 tatacaattgtcgtattacttaaataaaaatcttctcgacatgaaataaaatataatttgattttccaattaatgattttt 114  Q
    ||||||| ||| |||||||||||||| |||||| | |  ||||||||||| ||||||| ||||| | ||||||||| ||||    
T  13612339 tatacaactgttgtattacttaaatataaatctccccatcatgaaataaagtataattggatttccaaattaatgaatttt 13612419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.0000000006
Query Start/End: Original strand, 20 - 84
Target Start/End: Original strand, 36660543 - 36660607
Alignment:
Q  20 taaattaataaacgtatacaattgtcgtattacttaaataaaaatcttctcgacatgaaataaaa 84  Q
    ||||||||||||  |||||||||| | |||||| ||||||| ||| |||||| ||||||||||||    
T  36660543 taaattaataaaattatacaattgccatattacataaataagaattttctcgtcatgaaataaaa 36660607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 38 - 118
Target Start/End: Complemental strand, 30653459 - 30653380
Alignment:
Q  38 caattgtcgtattacttaaataaaaatcttctcgacatgaaataaaatataatttgattttccaattaatgatttttgttt 118  Q
    |||||| |||||||||||||||||||||||| |  ||| |||| ||||| ||  ||| ||| | |||||||||||||||||    
T  30653459 caattgacgtattacttaaataaaaatcttcacatcataaaatgaaatagaa-ctgaatttgctattaatgatttttgttt 30653380  T

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Target: chr3; HSP #9
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 20 - 120
Target Start/End: Original strand, 36981018 - 36981120
Alignment:
Q  20 taaattaataaacgtatacaattgtcgtattactt--aaataaaaatcttctcgacatgaaataaaatataatttgattttccaattaatgatttttgtt 117  Q
    ||||||||||||  ||||||||||| || ||||||  ||| || |||||||||   |||||||||||||||| | |||||   |||| ||| ||||||||    
T  36981018 taaattaataaaattatacaattgttgtgttacttcaaaaaaataatcttctctttatgaaataaaatataaatggatttcttaattgatggtttttgtt 36981117  T
Q  118 tta 120  Q
    |||    
T  36981118 tta 36981120  T

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Target: chr3; HSP #10
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 20 - 120
Target Start/End: Original strand, 37006457 - 37006559
Alignment:
Q  20 taaattaataaacgtatacaattgtcgtattactt--aaataaaaatcttctcgacatgaaataaaatataatttgattttccaattaatgatttttgtt 117  Q
    ||||||||||||  ||||||||||| || ||||||  ||| || |||||||||   |||||||||||||||| | |||||   |||| ||| ||||||||    
T  37006457 taaattaataaaattatacaattgttgtgttacttcaaaaaaataatcttctctttatgaaataaaatataaatggatttcttaattgatggtttttgtt 37006556  T
Q  118 tta 120  Q
    |||    
T  37006557 tta 37006559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 7e-16; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 7e-16
Query Start/End: Original strand, 20 - 118
Target Start/End: Original strand, 28143014 - 28143112
Alignment:
Q  20 taaattaataaacgtatacaattgtcgtattacttaaataaaaatcttctcgacatgaaataaaatataatttgattttccaattaatgatttttgttt 118  Q
    ||||||| ||||  |||||||| ||||||||| ||||||||||||||| ||  ||| |||||||||||||||  |||| | ||||||| ||||||||||    
T  28143014 taaattagtaaaattatacaatagtcgtattaattaaataaaaatcttttcatcataaaataaaatataattgaatttcctaattaatcatttttgttt 28143112  T

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Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.00000000000004
Query Start/End: Original strand, 34 - 120
Target Start/End: Original strand, 735000 - 735087
Alignment:
Q  34 tatacaattgtcgtattacttaaat-aaaaatcttctcgacatgaaataaaatataatttgattttccaattaatgatttttgtttta 120  Q
    ||||||||||||||||||||||||| ||||||||||||  || |||||||||||||| |  |||| | |||| | |||||||||||||    
T  735000 tatacaattgtcgtattacttaaataaaaaatcttctcatcaagaaataaaatataactgaatttcctaattgacgatttttgtttta 735087  T

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Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 34 - 86
Target Start/End: Original strand, 25851129 - 25851181
Alignment:
Q  34 tatacaattgtcgtattacttaaataaaaatcttctcgacatgaaataaaata 86  Q
    ||||||||||||||||||||||||||||||||||| || | |||||| |||||    
T  25851129 tatacaattgtcgtattacttaaataaaaatcttcccgtcgtgaaattaaata 25851181  T

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Target: scaffold0578 (Bit Score: 33; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0578
Description:

Target: scaffold0578; HSP #1
Raw Score: 33; E-Value: 0.0000000006
Query Start/End: Original strand, 20 - 84
Target Start/End: Original strand, 6638 - 6702
Alignment:
Q  20 taaattaataaacgtatacaattgtcgtattacttaaataaaaatcttctcgacatgaaataaaa 84  Q
    ||||||| ||||  ||||| | || ||||||||||||||||||| ||||||| ||||||||||||    
T  6638 taaattagtaaaattatacgactgccgtattacttaaataaaaaacttctcgtcatgaaataaaa 6702  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000002
Query Start/End: Original strand, 91 - 122
Target Start/End: Complemental strand, 394249 - 394218
Alignment:
Q  91 ttgattttccaattaatgatttttgttttaat 122  Q
    ||||||||||||||||||||||||||||||||    
T  394249 ttgattttccaattaatgatttttgttttaat 394218  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 40 - 84
Target Start/End: Original strand, 36029613 - 36029657
Alignment:
Q  40 attgtcgtattacttaaataaaaatcttctcgacatgaaataaaa 84  Q
    |||||||||||| ||||||||||| ||||||| || |||||||||    
T  36029613 attgtcgtattatttaaataaaaaacttctcgtcacgaaataaaa 36029657  T

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Target: scaffold0638 (Bit Score: 31; Significance: 0.00000001; HSPs: 1)
Name: scaffold0638
Description:

Target: scaffold0638; HSP #1
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 20 - 118
Target Start/End: Complemental strand, 3482 - 3384
Alignment:
Q  20 taaattaataaacgtatacaattgtcgtattacttaaataaaaatcttctcgacatgaaataaaatataatttgattttccaattaatgatttttgttt 118  Q
    ||||||| ||||  |||||||| |||||| ||||||||||||||  |||||   | ||||||||| ||| || ||||||| |||||||| ||| |||||    
T  3482 taaattagtaaaattatacaatcgtcgtagtacttaaataaaaaaattctcataaagaaataaaagatagttggattttctaattaatgttttgtgttt 3384  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 34 - 118
Target Start/End: Original strand, 7339281 - 7339362
Alignment:
Q  34 tatacaattgtcgtattacttaaataaaaatcttctcgacatgaaataaaatataatttgattttccaattaatgatttttgttt 118  Q
    ||||||||||||||||||||||   |||||||||||   |||| ||||||||| || |  |||||| ||||||||||| ||||||    
T  7339281 tatacaattgtcgtattactta---aaaaatcttcttttcatggaataaaatacaactgaattttctaattaatgattgttgttt 7339362  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 20 - 118
Target Start/End: Complemental strand, 29027825 - 29027727
Alignment:
Q  20 taaattaataaacgtatacaattgtcgtattacttaaataaaaatcttctcgacatgaaataaaatataatttgattttccaattaatgatttttgttt 118  Q
    ||||||| ||||  |||||||||||||| ||| |||||||||||  |||| |   |||| |||||||||| | ||||| | || |||||||||||||||    
T  29027825 taaattagtaaaattatacaattgtcgtcttaattaaataaaaaatttcttgtagtgaagtaaaatataactggatttcctaactaatgatttttgttt 29027727  T

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Target: scaffold1797 (Bit Score: 30; Significance: 0.00000004; HSPs: 1)
Name: scaffold1797
Description:

Target: scaffold1797; HSP #1
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 89
Target Start/End: Original strand, 833 - 902
Alignment:
Q  20 taaattaataaacgtatacaattgtcgtattacttaaataaaaatcttctcgacatgaaataaaatataa 89  Q
    ||||||||||||  ||||||||||| || |||| | || || |||||||||  |||||||||||||||||    
T  833 taaattaataaaattatacaattgttgtgttacatgaaaaataatcttctcttcatgaaataaaatataa 902  T

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