View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: Solexa-NF5700-2 (Length: 279)

Name: Solexa-NF5700-2
Description: NF5700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] Solexa-NF5700-2
Solexa-NF5700-2
[»] chr4 (10 HSPs)
chr4 (1-279)||(7615597-7615875)
chr4 (2-279)||(7606584-7606879)
chr4 (1-165)||(7637414-7637578)
chr4 (181-279)||(7637612-7637710)
chr4 (1-157)||(7628968-7629124)
chr4 (8-162)||(7655748-7655902)
chr4 (181-279)||(7629166-7629264)
chr4 (182-263)||(7655629-7655710)
chr4 (10-49)||(39098047-39098086)
chr4 (7-63)||(7633703-7633759)
[»] chr7 (4 HSPs)
chr7 (1-279)||(8935577-8935873)
chr7 (16-279)||(8910642-8910919)
chr7 (240-279)||(8934636-8934675)
chr7 (7-105)||(8918826-8918924)
[»] chr3 (1 HSPs)
chr3 (182-231)||(40146910-40146959)


Alignment Details
Target: chr4 (Bit Score: 271; Significance: 1e-151; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 1 - 279
Target Start/End: Original strand, 7615597 - 7615875
Alignment:
Q  1 cacagagcaccaaaggtgagttaaaagcgcttgtagagaagatattttgatggtaccaatctcatcattgattttcgattttagttgtacaattttctct 100  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7615597 cacagagcaccaaaggtgagttaaaagcacttgtagagaagatattttgatggtaccaatctcatcattgattttcgattttagttgtacaattttctct 7615696  T
Q  101 tttgtgaaatgaaatatcctatttgataaacaaagtttttcctcattagacgacgaaaaactcaattcatcaccgtaaacgaaaggaaatcgtatgggct 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7615697 tttgtgaaatgaaatatcctatttgataaacaaagtttttcctcattagacgacgaaaaactcaattcatcaccgtaaacgaaaggaaatcgtatgggct 7615796  T
Q  201 gttgaacaccagttggaaaccaacgctctagtgttgggggtttagatatttgatgatgacaacaactacgtgatatttc 279  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7615797 gttgaacaccatttggaaaccaacgctctagtgttgggggtttagatatttgatgatgacaacaactacgtgatatttc 7615875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 2 - 279
Target Start/End: Original strand, 7606584 - 7606879
Alignment:
Q  2 acagagcaccaaaggtgagttaaaagcgcttgtagagaagatattttgatggtaccaatctcatcattgattttcgattttagttgtacaattttctctt 101  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| ||||||||||||||||| |||||||  |||||||| |    
T  7606584 acagagcaccaaaggtgagttaaaagcgcttgtagagaagttattttgatggtaccaacctcttcattgattttcgatttcagttgtatgattttctcct 7606683  T
Q  102 ttgtgaaatgaaatatcctatttgataaacaaagtttttcctcattagacgacgaaaaactcaattcatcaccgt------------------aaacgaa 183  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| ||                   |  |||    
T  7606684 ttgtgaaatgaaataacctatttgataaacaaagtttttcctcattagacgatgaaaaactcaactcatcacagtgattattttgttgctccgtagtgaa 7606783  T
Q  184 aggaaatcgtatgggctgttgaacaccagttggaaaccaacgctctagtgttgggggtttagatatttgatgatgacaacaactacgtgatatttc 279  Q
    |||||||||||||||  |||||| |||| ||||||||||||||||||||||||||||||| |||||||||| |  ||||||||  |||||||||||    
T  7606784 aggaaatcgtatgggaagttgaataccatttggaaaccaacgctctagtgttgggggtttggatatttgatcaccacaacaaccgcgtgatatttc 7606879  T

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Target: chr4; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 165
Target Start/End: Original strand, 7637414 - 7637578
Alignment:
Q  1 cacagagcaccaaaggtgagttaaaagcgcttgtagagaagatattttgatggtaccaatctcatcattgattttcgattttagttgtacaattttctct 100  Q
    |||| ||||||||| |||||||||||| ||||||||||||||||||||| |||| || ||||| || |||||||||||||| | |||||  ||||||||     
T  7637414 cacatagcaccaaacgtgagttaaaagtgcttgtagagaagatattttggtggtgccgatctcttcgttgattttcgatttcaattgtaggattttctcc 7637513  T
Q  101 tttgtgaaatgaaatatcctatttgataaacaaagtttttcctcattagacgacgaaaaactcaa 165  Q
    |||||||||||||||| ||||||||||||||||  ||||||||||||| |||| |||||||||||    
T  7637514 tttgtgaaatgaaataacctatttgataaacaatatttttcctcattaaacgatgaaaaactcaa 7637578  T

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Target: chr4; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 181 - 279
Target Start/End: Original strand, 7637612 - 7637710
Alignment:
Q  181 gaaaggaaatcgtatgggctgttgaacaccagttggaaaccaacgctctagtgttgggggtttagatatttgatgatgacaacaactacgtgatatttc 279  Q
    ||||||||||||||| ||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  7637612 gaaaggaaatcgtataggccgttgaacaccatttggaaaccaacgctctagtgttgggggtttagatatttgatgatgacaacaactacgtgagatttc 7637710  T

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Target: chr4; HSP #5
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 1 - 157
Target Start/End: Original strand, 7628968 - 7629124
Alignment:
Q  1 cacagagcaccaaaggtgagttaaaagcgcttgtagagaagatattttgatggtaccaatctcatcattgattttcgattttagttgtacaattttctct 100  Q
    |||| |||||||||  ||||||| |||||||||||||||||||||||||||| |||||||||| |  |||||||| ||||| ||||| || ||||||||     
T  7628968 cacatagcaccaaacatgagttagaagcgcttgtagagaagatattttgatgttaccaatctctttgttgatttttgatttcagttgcacgattttctcc 7629067  T
Q  101 tttgtgaaatgaaatatcctatttgataaacaaagtttttcctcattagacgacgaa 157  Q
    ||||| || || ||||  ||||||||||||||||||||||| |||||||| ||||||    
T  7629068 tttgtaaagtggaataatctatttgataaacaaagtttttcatcattagatgacgaa 7629124  T

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Target: chr4; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 8 - 162
Target Start/End: Complemental strand, 7655902 - 7655748
Alignment:
Q  8 caccaaaggtgagttaaaagcgcttgtagagaagatattttgatggtaccaatctcatcattgattttcgattttagttgtacaattttctcttttgtga 107  Q
    |||||||| ||||||||||||||||||||||||||||||||  ||||| |||||||  |||||| ||||||||| ||||| |  |||||||  ||||| |    
T  7655902 caccaaagatgagttaaaagcgcttgtagagaagatatttttttggtatcaatctctgcattgactttcgatttcagttgcatgattttcttctttgtaa 7655803  T
Q  108 aatgaaatatcctatttgataaacaaagtttttcctcattagacgacgaaaaact 162  Q
    | ||||||||||| | ||||| | | |||||||| |||| ||| |||||||||||    
T  7655802 agtgaaatatcctctctgatagaaagagtttttcgtcatcagaagacgaaaaact 7655748  T

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Target: chr4; HSP #7
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 181 - 279
Target Start/End: Original strand, 7629166 - 7629264
Alignment:
Q  181 gaaaggaaatcgtatgggctgttgaacaccagttggaaaccaacgctctagtgttgggggtttagatatttgatgatgacaacaactacgtgatatttc 279  Q
    ||||||||||||||||||  |||||| |||| ||||||||||||| ||   |||||| ||||||||||||||||||||||||||||||||||| |||||    
T  7629166 gaaaggaaatcgtatgggaagttgaataccatttggaaaccaacgttcagatgttggaggtttagatatttgatgatgacaacaactacgtgagatttc 7629264  T

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Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 182 - 263
Target Start/End: Complemental strand, 7655710 - 7655629
Alignment:
Q  182 aaaggaaatcgtatgggctgttgaacaccagttggaaaccaacgctctagtgttgggggtttagatatttgatgatgacaac 263  Q
    |||||||||||||| ||  ||||||  ||| |||||||||||||||| || |||||||  ||||||||||||||||||||||    
T  7655710 aaaggaaatcgtataggtcgttgaattccatttggaaaccaacgctccagcgttggggagttagatatttgatgatgacaac 7655629  T

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Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 10 - 49
Target Start/End: Original strand, 39098047 - 39098086
Alignment:
Q  10 ccaaaggtgagttaaaagcgcttgtagagaagatattttg 49  Q
    |||||||||||||||||| ||||||| |||||||||||||    
T  39098047 ccaaaggtgagttaaaagtgcttgtaaagaagatattttg 39098086  T

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Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 7 - 63
Target Start/End: Original strand, 7633703 - 7633759
Alignment:
Q  7 gcaccaaaggtgagttaaaagcgcttgtagagaagatattttgatggtaccaatctc 63  Q
    |||||||||||||| ||||||||| | |||  || ||||||||| ||||||||||||    
T  7633703 gcaccaaaggtgagctaaaagcgcatataggaaatatattttgacggtaccaatctc 7633759  T

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Target: chr7 (Bit Score: 122; Significance: 1e-62; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 1 - 279
Target Start/End: Complemental strand, 8935873 - 8935577
Alignment:
Q  1 cacagagcaccaaaggtgagttaaaagcgcttgtagagaagatattttgatggtaccaatctcatcattgattttcgattttagttgtacaattttctct 100  Q
    |||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||  |||| || ||||| |||||||||    
T  8935873 cacacagcaccaaaggtgagttaaaggcgcttgtagagaagatattttgatggtaccaatctcttcattgatttttaatttcagctgtacgattttctct 8935774  T
Q  101 tttgtgaaatgaaatatcctatttgataaacaaagtttttcctcattagacgacgaaaaactcaattcatcaccgt------------------aaacga 182  Q
    ||||||||||||||||| |||||||| |||||||||||||| ||||   ||||| ||||||||||  |||||  ||                  ||  ||    
T  8935773 tttgtgaaatgaaatattctatttgagaaacaaagtttttcatcatctaacgacaaaaaactcaacccatcagagtgattcttttgttgctccaaagtga 8935674  T
Q  183 aaggaaatcgtatgggctgttgaacaccagttggaaaccaacgctctagtgttgggggtttagatatttgatgatgacaacaactacgtgatatttc 279  Q
    ||||||||||||| ||| |||||||||||   ||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |||||    
T  8935673 aaggaaatcgtattggccgttgaacaccatccggaaaccaacgttctagtgttggaggtttagatatttgatgatgacaacaactacgtgagatttc 8935577  T

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Target: chr7; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 16 - 279
Target Start/End: Complemental strand, 8910919 - 8910642
Alignment:
Q  16 gtgagttaaaagcgcttgtagagaagatattttgatggtaccaatctcatcattgattttcgattttagttgtacaattttctcttttgtgaaatgaaat 115  Q
    |||||||||||| ||||||||||||||||||||| |||| || ||||| || |||||||||||||| | |||||  |||||||| |||||||||||||||    
T  8910919 gtgagttaaaagtgcttgtagagaagatattttggtggtgccgatctcttcgttgattttcgatttcaattgtaggattttctcctttgtgaaatgaaat 8910820  T
Q  116 atcctatttgataaacaaagtttttcctcattagacgacgaaaaactcaattcatcaccgt------------------aaacgaaaggaaatcgtatgg 197  Q
    | |||||||||||||||| ||||||||||||||  ||| |||||||||||  |||||  ||                  ||  ||||||||||||||| |    
T  8910819 aacctatttgataaacaatgtttttcctcattaagcgatgaaaaactcaacccatcagagtgatccttttgttgctccaaagtgaaaggaaatcgtatag 8910720  T
Q  198 gctgttgaacaccagttggaaaccaacgctctagtgttgggggtttagatatttgatgatgacaacaactacgtgatatttc 279  Q
    || |||||||     |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||    
T  8910719 gccgttgaac----tttggaaaccaacgctctagtgttgggggtttagatatttgataatgacaacaactacgtgagatttc 8910642  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 240 - 279
Target Start/End: Complemental strand, 8934675 - 8934636
Alignment:
Q  240 gtttagatatttgatgatgacaacaactacgtgatatttc 279  Q
    ||||| |||||||||||||||||||||||||||| |||||    
T  8934675 gtttaaatatttgatgatgacaacaactacgtgagatttc 8934636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 105
Target Start/End: Complemental strand, 8918924 - 8918826
Alignment:
Q  7 gcaccaaaggtgagttaaaagcgcttgtagagaagatattttgatggtaccaatctcatcattgattttcgattttagttgtacaattttctcttttgt 105  Q
    |||||||||||||| ||||||||| | |||  || ||||||||| ||||||||||||    |||| ||| ||||| |||||||  |||||||| |||||    
T  8918924 gcaccaaaggtgagctaaaagcgcatataggaaatatattttgacggtaccaatctctgtgttgacttttgatttcagttgtaagattttctcctttgt 8918826  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 182 - 231
Target Start/End: Complemental strand, 40146959 - 40146910
Alignment:
Q  182 aaaggaaatcgtatgggctgttgaacaccagttggaaaccaacgctctag 231  Q
    ||||||||||||||||| ||||||| |||| ||||||||||||| |||||    
T  40146959 aaaggaaatcgtatgggatgttgaataccacttggaaaccaacgttctag 40146910  T

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