View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: Solexa-NF5700-3 (Length: 279)
Name: Solexa-NF5700-3
Description: NF5700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5700-3 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 143; Significance: 4e-75; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 7 - 245
Target Start/End: Original strand, 3903344 - 3903588
Alignment:
| Q |
7 |
agcaagagtactactagacaagaaaataaataatgaatatcccaagatagaaaggtgatacatgcaaagcttgcaataactattcgattgtatcaattat |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
3903344 |
agcaagagtactactagacaagaaaataaataatgaatatcccaagatagaaaggtgatacatgcaaagcttgcaataactattcgattgtaacaattat |
3903443 |
T |
|
| Q |
107 |
tctacaagaaacaagaagaggatcagcgacaaatatgtatacacacttgttgaaccaattctcataaa--------gaacaaaatatcaactacattagg |
198 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||| | |||| || ||||| ||| ||| | |||||||||||||||||||||||| |
|
|
| T |
3903444 |
tctacaagaaacaagaaaaggatcagcgacaaata--tcaacactttttttgaagaaatatatatacacacttgttgaacaaaatatcaactacattagg |
3903541 |
T |
|
| Q |
199 |
aaatgacttcctcttctcctaaattctacaccatctctctgctcctc |
245 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||| ||||| |
|
|
| T |
3903542 |
aaatgacttcctcttctcctaaattctacaccatctttctgttcctc |
3903588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 23 - 117
Target Start/End: Original strand, 3906123 - 3906217
Alignment:
| Q |
23 |
gacaagaaaataaataatgaatatcccaagatagaaaggtgatacatgcaaagcttgcaataactattcgattgtatcaattattctacaagaaa |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| |||||||||||| |
|
|
| T |
3906123 |
gacaagaaaataaataatgaatatcccaagatagaaaggtgatacatggaaagcttgcaaaaactattcgattgtatcaatttttctacaagaaa |
3906217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 149 - 245
Target Start/End: Original strand, 3906310 - 3906406
Alignment:
| Q |
149 |
acacttgttgaaccaattctcataaagaacaaaatatcaactacattaggaaatgacttcctcttctcctaaattctacaccatctctctgctcctc |
245 |
Q |
| |
|
||||||||||||||| ||||||| ||||||||||||||| ||||||||||||||| |||||||||||||||||||||||| ||||| |||| ||||| |
|
|
| T |
3906310 |
acacttgttgaaccatttctcatgaagaacaaaatatcatctacattaggaaatggcttcctcttctcctaaattctacatcatctttctgttcctc |
3906406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 10 - 103
Target Start/End: Original strand, 3900348 - 3900438
Alignment:
| Q |
10 |
aagagtactactagacaagaaaataaataatgaatatcccaagatagaaaggtgatacatgcaaagcttgcaataactattcgattgtatcaat |
103 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||| ||||| || ||||||||||||||||||| |||||| |||| |||| |||||||||| |
|
|
| T |
3900348 |
aagagtactactagacaagaaaa-aaataatgaatattccaag-ta-aaaggtgatacatgcaaagtttgcaacaactcttcggttgtatcaat |
3900438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 147 - 239
Target Start/End: Original strand, 3876444 - 3876539
Alignment:
| Q |
147 |
acacacttgttgaaccaattctcataaagaacaaaatatcaactacattaggaa---atgacttcctcttctcctaaattctacaccatctctctg |
239 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||| |||| ||||||| | | ||| |||||||| | |||||||||||| |||||| |||| |
|
|
| T |
3876444 |
acacacttgttgaagcaattctcataaagaacaaaacatcatttacattaagcaagcatggcttcctctacgcctaaattctacgccatctttctg |
3876539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University