View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: Solexa-NF5700-4 (Length: 250)
Name: Solexa-NF5700-4
Description: NF5700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5700-4 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 10 - 248
Target Start/End: Original strand, 11175789 - 11176027
Alignment:
| Q |
10 |
cctaactcaagaaagaataagaaccaactttgattgtttgatgatgatggtggtcacatcatatcattttagcagcatcaccacatgcatataaaataaa |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11175789 |
cctaactcaagaaagaataagaaccaactttgattgtttgatgatgatggtggtcacatcatatcattttagcagcatcaccacatgcatataaaataaa |
11175888 |
T |
|
| Q |
110 |
ctaattaatggaccaaagtccaaaccaaggaaaaaatgtggaccaaccgtcaacaacataaagtgtacaaaacactacaacacatttacgtcatcctaaa |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11175889 |
ctaattaatggaccaaagtccaaaccaaggaaaaaatgtggaccaaccgtcaacaacataaagtgtacaaaacactacaacacatttacgtcatcctaaa |
11175988 |
T |
|
| Q |
210 |
ccaaatcaatccctgcctagagaactagtgtactcgtgt |
248 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11175989 |
ccaaatcaatccctgcctagagaactagtgtactcgtgt |
11176027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University