View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5700-8 (Length: 242)
Name: Solexa-NF5700-8
Description: NF5700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5700-8 |
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| [»] chr4 (6 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 166; Significance: 6e-89; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 77 - 242
Target Start/End: Complemental strand, 7616094 - 7615929
Alignment:
| Q |
77 |
gagaatacttgtgttgctgacatcctagaacctacctatgtacctccaattgttgattcatttttcgctttaaccggggttgaaagctacgaaggcacct |
176 |
Q |
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| T |
7616094 |
gagaatacttgtgttgctgacatcctagaacctacctatgtacctccaattgttgattcatttttcgctttaaccggggttgaaagctacgaaggcacct |
7615995 |
T |
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| Q |
177 |
caaaaccgttgttggcagttcaagtaacggagctagttgacggtatttttattggttgctcgttca |
242 |
Q |
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| T |
7615994 |
caaaaccgttgttggcagttcaagtaacggagctagttgacggtatttttattggttgctcgttca |
7615929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 65 - 237
Target Start/End: Complemental strand, 7637941 - 7637769
Alignment:
| Q |
65 |
catgccccaacagagaatacttgtgttgctgacatcctagaacctacctatgtacctccaattgttgattcatttttcgctttaaccggggttgaaagct |
164 |
Q |
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| T |
7637941 |
catgccgcagcagagaatacttgtgttgcagacatcctagaacccacctacgtacctccaattgttgatttattatttgctttatccgaagtaagaagct |
7637842 |
T |
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| Q |
165 |
acgaaggcacctcaaaaccgttgttggcagttcaagtaacggagctagttgacggtatttttattggttgctc |
237 |
Q |
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| T |
7637841 |
atgaaggcacatcaaaaccattgttggcagttcaagtaacggagctagttgacggtattttcattggttgctc |
7637769 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 77 - 235
Target Start/End: Complemental strand, 7629483 - 7629325
Alignment:
| Q |
77 |
gagaatacttgtgttgctgacatcctagaacctacctatgtacctccaattgttgattcatttttcgctttaaccggggttgaaagctacgaaggcacct |
176 |
Q |
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| T |
7629483 |
gagaatacttgtgttgctgacatcctagaaccggtctacgtacctcaaattgtcgattcactatttgcctttataggagataaaagctacgaaggcacgt |
7629384 |
T |
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| Q |
177 |
caaaaccgttgttggcagttcaagtaacggagctagttgacggtatttttattggttgc |
235 |
Q |
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| T |
7629383 |
caaaaccattgttggctgttcaagtaacggagctagttgacggtgtctttattggttgc |
7629325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 75 - 242
Target Start/End: Complemental strand, 7607100 - 7606933
Alignment:
| Q |
75 |
cagagaatacttgtgttgctgacatcctagaacctacctatgtacctccaattgttgattcatttttcgctttaaccggggttgaaagctacgaaggcac |
174 |
Q |
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| T |
7607100 |
cagagaatattcgtgttgctgacatcctggaaccggtctacgtacctctaattgtcgattcattttttgccttcatcggagataaaaactatgaaggcac |
7607001 |
T |
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| Q |
175 |
ctcaaaaccgttgttggcagttcaagtaacggagctagttgacggtatttttattggttgctcgttca |
242 |
Q |
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| T |
7607000 |
gtcaaaaccattgttggctgttcaaataacggagctagttgacggtattttcattggttgctccttca |
7606933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 81 - 219
Target Start/End: Original strand, 7655401 - 7655539
Alignment:
| Q |
81 |
atacttgtgttgctgacatcctagaacctacctatgtacctccaattgttgattcatttttcgctttaaccggggttgaaagctacgaaggcacctcaaa |
180 |
Q |
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| T |
7655401 |
atacttgtgttgctgacatcctaaaacccacatatgttccttcggttgttcgttcattttttcctttcaatgacgttagaaactacgaaggcacatcaaa |
7655500 |
T |
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| Q |
181 |
accgttgttggcagttcaagtaacggagctagttgacgg |
219 |
Q |
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| T |
7655501 |
accattgttggctgttcaagtcacggagctagttgacgg |
7655539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 231
Target Start/End: Complemental strand, 39098443 - 39098375
Alignment:
| Q |
163 |
ctacgaaggcacctcaaaaccgttgttggcagttcaagtaacggagctagttgacggtatttttattgg |
231 |
Q |
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| T |
39098443 |
ctacgaaggcacatcaaaaccattgcttgcagttcaagttactgagcttgttgatggtattttcattgg |
39098375 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 115; Significance: 2e-58; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 75 - 237
Target Start/End: Original strand, 8934415 - 8934577
Alignment:
| Q |
75 |
cagagaatacttgtgttgctgacatcctagaacctacctatgtacctccaattgttgattcatttttcgctttaaccggggttgaaagctacgaaggcac |
174 |
Q |
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| T |
8934415 |
cagagaatacttgtgttgctgacattctagaacccacctacgtacctccaattgttgattcattttttgctttaaccggtgttagaagctacgaaggcac |
8934514 |
T |
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| Q |
175 |
ctcaaaaccgttgttggcagttcaagtaacggagctagttgacggtatttttattggttgctc |
237 |
Q |
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| T |
8934515 |
atcaaaaccattgttggcagttcaagtaacggagttaattgacggtattttcattggttgctc |
8934577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 75 - 237
Target Start/End: Original strand, 8929960 - 8930122
Alignment:
| Q |
75 |
cagagaatacttgtgttgctgacatcctagaacctacctatgtacctccaattgttgattcatttttcgctttaaccggggttgaaagctacgaaggcac |
174 |
Q |
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| T |
8929960 |
cagagaatacttgtgttgctgacattctagaacccacctacgtacctccaattgttgattcattttttgctttaaccggtgttagaagctacgaagtcac |
8930059 |
T |
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| Q |
175 |
ctcaaaaccgttgttggcagttcaagtaacggagctagttgacggtatttttattggttgctc |
237 |
Q |
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| T |
8930060 |
atcaaaaccattgttggcatttcaagtaactgagttaattgacggtattttcattggttgctc |
8930122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 75 - 237
Target Start/End: Original strand, 8935356 - 8935518
Alignment:
| Q |
75 |
cagagaatacttgtgttgctgacatcctagaacctacctatgtacctccaattgttgattcatttttcgctttaaccggggttgaaagctacgaaggcac |
174 |
Q |
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| T |
8935356 |
cagagaatacttgtgttgctgacattctagaacccacctacgtaccaccaattgttgattcattttttgctttaaccgatgttagaagctacgaaggcac |
8935455 |
T |
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| Q |
175 |
ctcaaaaccgttgttggcagttcaagtaacggagctagttgacggtatttttattggttgctc |
237 |
Q |
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| T |
8935456 |
atcaaaaccattgttggcagttcaagtaactgagttaattgacggtattttcattggttgctc |
8935518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 179 - 237
Target Start/End: Original strand, 8910525 - 8910583
Alignment:
| Q |
179 |
aaaccgttgttggcagttcaagtaacggagctagttgacggtatttttattggttgctc |
237 |
Q |
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| T |
8910525 |
aaaccattgttggcagttcaagtaacggagctagttgacggtattttcattggttgctc |
8910583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 67; Significance: 7e-30; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 1237889 - 1237955
Alignment:
| Q |
1 |
caaatggtggagtagaaaactgattctctgttgcctctgagattgaatagtcctcttggtcactcat |
67 |
Q |
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| T |
1237889 |
caaatggtggagtagaaaactgattctctgttgcctctgagattgaatagtcctcttggtcactcat |
1237955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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