View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5700-9 (Length: 161)
Name: Solexa-NF5700-9
Description: NF5700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5700-9 |
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Alignment Details
Target: chr6 (Bit Score: 144; Significance: 5e-76; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 144; E-Value: 5e-76
Query Start/End: Original strand, 1 - 160
Target Start/End: Complemental strand, 2909797 - 2909639
Alignment:
| Q |
1 |
agaagcagagataaataaaagaaaggtaactcattcgggtttgttgaattttattgatggaatttggtcaacatgtggaggagaaaggatcataattttc |
100 |
Q |
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||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
2909797 |
agaagaagagataaataaaagaaaggtaacacattcgggtttgttgaattttattgatggaatttggtcaacatgtggaggagaaaggatcataa-tttc |
2909699 |
T |
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| Q |
101 |
acaactaattttgtggacaaacttgatcctgctcttataaggaggggaaggatggatatg |
160 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2909698 |
acaactaattttgtggacaaacttgatcctgctcttataaggaggggaaggatggatatg |
2909639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 114; E-Value: 4e-58
Query Start/End: Original strand, 17 - 158
Target Start/End: Complemental strand, 2860339 - 2860198
Alignment:
| Q |
17 |
aaaagaaaggtaactcattcgggtttgttgaattttattgatggaatttggtcaacatgtggaggagaaaggatcataattttcacaactaattttgtgg |
116 |
Q |
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||||| |||||||||| ||||||||||||||||| ||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
2860339 |
aaaagcaaggtaactctttcgggtttgttgaattctattgatggaatttggtcatcatgtggaggagaacggatcataattttcacaactaattttgtgg |
2860240 |
T |
|
| Q |
117 |
acaaacttgatcctgctcttataaggaggggaaggatggata |
158 |
Q |
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||||||||||||||||||| || ||||||||||||||||||| |
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| T |
2860239 |
acaaacttgatcctgctctaattaggaggggaaggatggata |
2860198 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 17 - 158
Target Start/End: Complemental strand, 2865724 - 2865583
Alignment:
| Q |
17 |
aaaagaaaggtaactcattcgggtttgttgaattttattgatggaatttggtcaacatgtggaggagaaaggatcataattttcacaactaattttgtgg |
116 |
Q |
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||||| || ||||||| ||||||||||||||||| ||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
2865724 |
aaaagcaatgtaactctttcgggtttgttgaattctattgatggaatttggtcatcatgtggaggagaacggatcataattttcacaactaattttgtgg |
2865625 |
T |
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| Q |
117 |
acaaacttgatcctgctcttataaggaggggaaggatggata |
158 |
Q |
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||||||||||||||||||| || ||||||||||||||||||| |
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| T |
2865624 |
acaaacttgatcctgctctaattaggaggggaaggatggata |
2865583 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 17 - 158
Target Start/End: Complemental strand, 2884914 - 2884773
Alignment:
| Q |
17 |
aaaagaaaggtaactcattcgggtttgttgaattttattgatggaatttggtcaacatgtggaggagaaaggatcataattttcacaactaattttgtgg |
116 |
Q |
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||||| || ||||||| ||||||||||||||||| ||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
2884914 |
aaaagcaatgtaactctttcgggtttgttgaattctattgatggaatttggtcatcatgtggaggagaacggatcataattttcacaactaattttgtgg |
2884815 |
T |
|
| Q |
117 |
acaaacttgatcctgctcttataaggaggggaaggatggata |
158 |
Q |
| |
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||||||||||||||||||| || ||||||||||||||||||| |
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| T |
2884814 |
acaaacttgatcctgctctaattaggaggggaaggatggata |
2884773 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 108; E-Value: 1e-54
Query Start/End: Original strand, 7 - 158
Target Start/End: Original strand, 2842535 - 2842686
Alignment:
| Q |
7 |
agagataaataaaagaaaggtaactcattcgggtttgttgaattttattgatggaatttggtcaacatgtggaggagaaaggatcataattttcacaact |
106 |
Q |
| |
|
||||| |||| |||| |||||||||| ||||||||||||||||||||||||||||||||||||| |||||||| ||| ||||||||||||||||||||| |
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| T |
2842535 |
agagaaaaatgaaagtaaggtaactctttcgggtttgttgaattttattgatggaatttggtcagcatgtggatcagagaggatcataattttcacaact |
2842634 |
T |
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| Q |
107 |
aattttgtggacaaacttgatcctgctcttataaggaggggaaggatggata |
158 |
Q |
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||||||||||| |||||||||||||||||||||||||| ||||| ||||||| |
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| T |
2842635 |
aattttgtggataaacttgatcctgctcttataaggagaggaagaatggata |
2842686 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 102; E-Value: 6e-51
Query Start/End: Original strand, 1 - 158
Target Start/End: Complemental strand, 2833091 - 2832934
Alignment:
| Q |
1 |
agaagcagagataaataaaagaaaggtaactcattcgggtttgttgaattttattgatggaatttggtcaacatgtggaggagaaaggatcataattttc |
100 |
Q |
| |
|
||||| ||||| |||| |||| |||||||||| ||| |||||||||||||| |||||||||||||||||| |||||||| ||| ||||| ||||||||| |
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| T |
2833091 |
agaagaagagaaaaatgaaagtaaggtaactctttctggtttgttgaatttcattgatggaatttggtcagcatgtggatcagagaggataataattttc |
2832992 |
T |
|
| Q |
101 |
acaactaattttgtggacaaacttgatcctgctcttataaggaggggaaggatggata |
158 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
2832991 |
acaacaaattttgtggacaaacttgatcctgctcttataaggaggggaagaatggata |
2832934 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 95; E-Value: 9e-47
Query Start/End: Original strand, 26 - 160
Target Start/End: Original strand, 14578259 - 14578393
Alignment:
| Q |
26 |
gtaactcattcgggtttgttgaattttattgatggaatttggtcaacatgtggaggagaaaggatcataattttcacaactaattttgtggacaaacttg |
125 |
Q |
| |
|
||||||| ||| ||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| || |||||||| ||||||| |
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| T |
14578259 |
gtaactctttctggtttgttgaattttatcgatggaatttggtcggcatgtggaggagaaaggatcataattttcacaaccaactttgtggataaacttg |
14578358 |
T |
|
| Q |
126 |
atcctgctcttataaggaggggaaggatggatatg |
160 |
Q |
| |
|
||| ||||||||| ||||||||||||||||||||| |
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| T |
14578359 |
atcatgctcttattaggaggggaaggatggatatg |
14578393 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 94; E-Value: 3e-46
Query Start/End: Original strand, 25 - 158
Target Start/End: Original strand, 2829147 - 2829280
Alignment:
| Q |
25 |
ggtaactcattcgggtttgttgaattttattgatggaatttggtcaacatgtggaggagaaaggatcataattttcacaactaattttgtggacaaactt |
124 |
Q |
| |
|
|||||||| ||| ||||||||||||||||||||||| |||||||| ||||||||||||| |||||||||||||||||||| |||||||||||||||||| |
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| T |
2829147 |
ggtaactctttctggtttgttgaattttattgatgggatttggtctgcatgtggaggagagaggatcataattttcacaacaaattttgtggacaaactt |
2829246 |
T |
|
| Q |
125 |
gatcctgctcttataaggaggggaaggatggata |
158 |
Q |
| |
|
|||||||| || || ||||||||||||||||||| |
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| T |
2829247 |
gatcctgccctaattaggaggggaaggatggata |
2829280 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 65; Significance: 7e-29; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 65; E-Value: 7e-29
Query Start/End: Original strand, 38 - 158
Target Start/End: Original strand, 1801152 - 1801272
Alignment:
| Q |
38 |
ggtttgttgaattttattgatggaatttggtcaacatgtggaggagaaaggatcataattttcacaactaattttgtggacaaacttgatcctgctctta |
137 |
Q |
| |
|
||||| |||||||||||||||||||||||||| | |||||||| || ||||| ||||||||||| || ||||||||||| ||||||||||| ||||||| |
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| T |
1801152 |
ggtttattgaattttattgatggaatttggtccgcgtgtggaggggagaggattataattttcacgacgaattttgtggagaaacttgatccagctctta |
1801251 |
T |
|
| Q |
138 |
taaggaggggaaggatggata |
158 |
Q |
| |
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| |||| ||||||||||||| |
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| T |
1801252 |
ttaggacaggaaggatggata |
1801272 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 6e-17; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 6e-17
Query Start/End: Original strand, 44 - 156
Target Start/End: Original strand, 44396419 - 44396531
Alignment:
| Q |
44 |
ttgaattttattgatggaatttggtcaacatgtggaggagaaaggatcataattttcacaactaattttgtggacaaacttgatcctgctcttataagga |
143 |
Q |
| |
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|||||||| |||||||| || |||||| | |||||||| |||||| | || |||||||||| |||| |||||| || ||||||||||| |||||||||| |
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| T |
44396419 |
ttgaatttcattgatggtatatggtcagcttgtggaggtgaaaggttaattgttttcacaacaaattatgtggagaagcttgatcctgcacttataagga |
44396518 |
T |
|
| Q |
144 |
ggggaaggatgga |
156 |
Q |
| |
|
|||| || ||||| |
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|
| T |
44396519 |
ggggtagaatgga |
44396531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 122 - 158
Target Start/End: Original strand, 6318517 - 6318553
Alignment:
| Q |
122 |
cttgatcctgctcttataaggaggggaaggatggata |
158 |
Q |
| |
|
|||||||||||||| || ||||||||||||||||||| |
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|
| T |
6318517 |
cttgatcctgctctcatcaggaggggaaggatggata |
6318553 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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