View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: Solexa-NF5704-1 (Length: 111)
Name: Solexa-NF5704-1
Description: NF5704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5704-1 |
 | |
|
| [»] scaffold0286 (1 HSPs) |
| |
|
| [»] chr6 (2 HSPs) |
| |
|
Alignment Details
Target: scaffold0286 (Bit Score: 104; Significance: 2e-52; HSPs: 1)
Name: scaffold0286
Description:
Target: scaffold0286; HSP #1
Raw Score: 104; E-Value: 2e-52
Query Start/End: Original strand, 8 - 111
Target Start/End: Original strand, 12471 - 12574
Alignment:
| Q |
8 |
tttacttgctaaacttgtgagttatttacaaataacaggatgtgcatgaagatggaggcaccgagtttagtttggcaggaagtgctaggattccagagtg |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12471 |
tttacttgctaaacttgtgagttatttacaaataacaggatgtgcatgaagatggaggcaccgagtttagtttggcaggaagtgctaggattccagagtg |
12570 |
T |
|
| Q |
108 |
gttt |
111 |
Q |
| |
|
|||| |
|
|
| T |
12571 |
gttt |
12574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 104; Significance: 2e-52; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 104; E-Value: 2e-52
Query Start/End: Original strand, 8 - 111
Target Start/End: Complemental strand, 2170790 - 2170687
Alignment:
| Q |
8 |
tttacttgctaaacttgtgagttatttacaaataacaggatgtgcatgaagatggaggcaccgagtttagtttggcaggaagtgctaggattccagagtg |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2170790 |
tttacttgctaaacttgtgagttatttacaaataacaggatgtgcatgaagatggaggcaccgagtttagtttggcaggaagtgctaggattccagagtg |
2170691 |
T |
|
| Q |
108 |
gttt |
111 |
Q |
| |
|
|||| |
|
|
| T |
2170690 |
gttt |
2170687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 80; E-Value: 5e-38
Query Start/End: Original strand, 12 - 111
Target Start/End: Original strand, 2187840 - 2187939
Alignment:
| Q |
12 |
cttgctaaacttgtgagttatttacaaataacaggatgtgcatgaagatggaggcaccgagtttagtttggcaggaagtgctaggattccagagtggttt |
111 |
Q |
| |
|
|||||||||||||| |||| |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
2187840 |
cttgctaaacttgttagttctttacaaataacagcatttgcatgaagatggaggcaccgagtttagtttggcaggaagtgctagggttccagagtggttt |
2187939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University