View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5704-11 (Length: 141)
Name: Solexa-NF5704-11
Description: NF5704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5704-11 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 105; Significance: 8e-53; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 105; E-Value: 8e-53
Query Start/End: Original strand, 1 - 141
Target Start/End: Original strand, 29415416 - 29415556
Alignment:
| Q |
1 |
caaaggaggggatgctaattccttgtattggactttggaagattaattcagtataaaatgttaaactctttcaattgtttatttgaaataattccactcc |
100 |
Q |
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| T |
29415416 |
caaaggaggggatgatgattccttgtgttgggacttggaatattaattcagtataaaatgttaaactctttcaattgtttatttgacataattccactcc |
29415515 |
T |
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| Q |
101 |
tactttggtcaattagtttcgatcacaacaagcctacagat |
141 |
Q |
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| T |
29415516 |
tactttggtcaattagtttcgatcacaacaagcctaaagat |
29415556 |
T |
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