View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5704-13 (Length: 240)
Name: Solexa-NF5704-13
Description: NF5704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5704-13 |
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Alignment Details
Target: chr8 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 8 - 231
Target Start/End: Original strand, 4951749 - 4951972
Alignment:
| Q |
8 |
gatggatcatagaaaattaaaaagaaggaacatagagtaatttatatctttataatggaaactggaaaatagtctcatctcattctcaatcatgaatttt |
107 |
Q |
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| T |
4951749 |
gatggatcatagaaagttaaaaagaaggaacatagagtaatttatatctttataatggaaactagaaaatagtctcatctcattctcaatcatgaatttt |
4951848 |
T |
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| Q |
108 |
agaggaatcatctttatgttgagatgtgttgcatggaatttcacataaatcttccatgttgcaaggaaaagagttaccaatttgcatgtcagctaccatt |
207 |
Q |
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| T |
4951849 |
agaggaatcatctttgtgttgagatgtgttgcatggaatttcacataaatcttccatgttgcaaggaaaagagttaccaatttgcatgtcagctaccatt |
4951948 |
T |
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| Q |
208 |
tgacgaagatcaaaagtttcttct |
231 |
Q |
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| T |
4951949 |
tgacgaagatcaaaagtttcttct |
4951972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 121; Significance: 4e-62; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 91 - 230
Target Start/End: Complemental strand, 10483843 - 10483701
Alignment:
| Q |
91 |
tctcaatcatgaattttagaggaatcatc---tttatgttgagatgtgttgcatggaatttcacataaatcttccatgttgcaaggaaaagagttaccaa |
187 |
Q |
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| T |
10483843 |
tctcaatcatgaattttagaggaatcatcatctttgtgttgagatgtgttgcatggaatttcacataaatcttccatgttgcaaggaaaagagttaccaa |
10483744 |
T |
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| Q |
188 |
tttgcatgtcagctaccatttgacgaagatcaaaagtttcttc |
230 |
Q |
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| T |
10483743 |
tttgcatgtcagctaccatttggcgaagatcaaaagtttcttc |
10483701 |
T |
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