View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: Solexa-NF5704-15 (Length: 165)
Name: Solexa-NF5704-15
Description: NF5704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5704-15 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 143; Significance: 2e-75; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 143; E-Value: 2e-75
Query Start/End: Original strand, 1 - 155
Target Start/End: Complemental strand, 40776286 - 40776132
Alignment:
| Q |
1 |
agatgaagcagaacaaagaaggaactcagatgttcacgaaattctccaacgcactcgcttttcatcagtctttgatacagatcaaccacgaacaattccg |
100 |
Q |
| |
|
||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40776286 |
agatggagcggaacaaagaaggaactcagatgttcacgaaattctccaacgcactcgcttttcatcagtctttgatacagatcaaccacgaacaattcca |
40776187 |
T |
|
| Q |
101 |
tcgcacgagtaagcaagtttatctttacttaaaaagttgtccttttactatcatc |
155 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40776186 |
tcgcacgagtaagcaagtttatctttacttaaaaagttgtccttttactatcatc |
40776132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 40769403 - 40769290
Alignment:
| Q |
1 |
agatgaagcagaacaaagaaggaactcagatgttcacgaaattctccaacgcactcgcttttcatcagtctttgatacagatcaaccacgaacaattccg |
100 |
Q |
| |
|
||||| ||| ||||||||| | ||||||||||| || |||||||| ||||||||||| || |||||||||||||||||||||||||||| | |||||| |
|
|
| T |
40769403 |
agatggagcggaacaaagacgaaactcagatgtacatgaaattctacaacgcactcgtttctcatcagtctttgatacagatcaaccacagaaaattcca |
40769304 |
T |
|
| Q |
101 |
tcgcacgagtaagc |
114 |
Q |
| |
|
|| || |||||||| |
|
|
| T |
40769303 |
tcacatgagtaagc |
40769290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 45; Significance: 6e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 45; E-Value: 6e-17
Query Start/End: Original strand, 2 - 114
Target Start/End: Original strand, 4678850 - 4678962
Alignment:
| Q |
2 |
gatgaagcagaacaaagaaggaactcagatgttcacgaaattctccaacgcactcgcttttcatcagtctttgatacagatcaaccacgaacaattccgt |
101 |
Q |
| |
|
|||| ||| ||||||||| | |||||||||||| | |||||||||| ||||||| |||| || || ||||||| |||||||||| | | |||||| || | |
|
|
| T |
4678850 |
gatggagctgaacaaagacgaaactcagatgttaatgaaattctccgacgcacttgcttctcgtctgtctttgctacagatcaagcgctaacaatcccat |
4678949 |
T |
|
| Q |
102 |
cgcacgagtaagc |
114 |
Q |
| |
|
||||||||||||| |
|
|
| T |
4678950 |
cgcacgagtaagc |
4678962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University