View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5704-18 (Length: 156)
Name: Solexa-NF5704-18
Description: NF5704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5704-18 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 132; Significance: 7e-69; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 132; E-Value: 7e-69
Query Start/End: Original strand, 1 - 156
Target Start/End: Original strand, 41249399 - 41249549
Alignment:
| Q |
1 |
gaaatgatacaggaacacagacaaacttgttattgttagaccaaattaaatatatcactataaactctaaggcagactcgttttgctggtcctctcatat |
100 |
Q |
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| T |
41249399 |
gaaatgatacaggaacacaaacaaacttgttattgttagaccaaat-----atatcactataaactctaaggcagactcgttttgctggtcctctcatat |
41249493 |
T |
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| Q |
101 |
ttctgatcgtgatgtaaaaatatacagaatagatgctccccaacctctgttcacaa |
156 |
Q |
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| T |
41249494 |
ttctgatcgtgatgtaaaaatatacagaatagatgctccccaacctctgttcacaa |
41249549 |
T |
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