View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5704-19 (Length: 141)
Name: Solexa-NF5704-19
Description: NF5704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5704-19 |
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| [»] chr2 (8 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 117; Significance: 5e-60; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 117; E-Value: 5e-60
Query Start/End: Original strand, 21 - 141
Target Start/End: Complemental strand, 34980721 - 34980601
Alignment:
| Q |
21 |
cttgccacatccataagtaattcaactagtttagttggtcttatcttaatcaattccatgtcccgagaagcttcaatcggaaaaccttggccaaaaactt |
120 |
Q |
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| T |
34980721 |
cttgccacatccataagtaattcaactagtttagttggtcttatcttaatcaattccatgtcccgagaagcttcaatcggaaaaccttgtccaaaaactt |
34980622 |
T |
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| Q |
121 |
cctttgttgacattggatttt |
141 |
Q |
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| T |
34980621 |
cctttgttgacattggatttt |
34980601 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 73; E-Value: 1e-33
Query Start/End: Original strand, 25 - 141
Target Start/End: Complemental strand, 34985164 - 34985048
Alignment:
| Q |
25 |
ccacatccataagtaattcaactagtttagttggtcttatcttaatcaattccatgtcccgagaagcttcaatcggaaaaccttggccaaaaacttcctt |
124 |
Q |
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| T |
34985164 |
ccacatccataagtaattcaactagtttagttggacttatcttaatcaatgccttgtcccgagaagcttcaatctgcaaaccttgttcaaaaacttccat |
34985065 |
T |
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| Q |
125 |
tgttgacattggatttt |
141 |
Q |
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| T |
34985064 |
tgtatacattgaatttt |
34985048 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 70; E-Value: 6e-32
Query Start/End: Original strand, 29 - 138
Target Start/End: Complemental strand, 34993115 - 34993006
Alignment:
| Q |
29 |
atccataagtaattcaactagtttagttggtcttatcttaatcaattccatgtcccgagaagcttcaatcggaaaaccttggccaaaaacttcctttgtt |
128 |
Q |
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| T |
34993115 |
atccataagtacttcaactagtttagttggacttatcttaatcaatgccatatcccgtgaaccttcaatctgcaaaccttgtccaaaaacgtcctttgtt |
34993016 |
T |
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| Q |
129 |
gacattggat |
138 |
Q |
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| T |
34993015 |
gacattggat |
34993006 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 69; E-Value: 2e-31
Query Start/End: Original strand, 25 - 141
Target Start/End: Original strand, 27542482 - 27542598
Alignment:
| Q |
25 |
ccacatccataagtaattcaactagtttagttggtcttatcttaatcaattccatgtcccgagaagcttcaatcggaaaaccttggccaaaaacttcctt |
124 |
Q |
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||||||||||||||| |||||||||||||||||| ||||||||||||||| |||||| |||| ||||||||||| | |||||||| |||||||||| | | |
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| T |
27542482 |
ccacatccataagtatttcaactagtttagttggacttatcttaatcaatgccatgttccgaaaagcttcaatctgcaaaccttgtccaaaaactttcat |
27542581 |
T |
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| Q |
125 |
tgttgacattggatttt |
141 |
Q |
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| T |
27542582 |
tgtgtacattggatttt |
27542598 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 57; E-Value: 3e-24
Query Start/End: Original strand, 25 - 141
Target Start/End: Original strand, 27581375 - 27581491
Alignment:
| Q |
25 |
ccacatccataagtaattcaactagtttagttggtcttatcttaatcaattccatgtcccgagaagcttcaatcggaaaaccttggccaaaaacttcctt |
124 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||| |||| ||||||||| || ||||||||| |||||||| ||| |||||||| | |
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| T |
27581375 |
ccacatccataagtaattcaactagtttagttggaattatcttaaccaatgccatgtcccacgaggcttcaatctataaaccttgtccagaaacttccat |
27581474 |
T |
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| Q |
125 |
tgttgacattggatttt |
141 |
Q |
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||| |||||||||||| |
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| T |
27581475 |
tgtgtacattggatttt |
27581491 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 48; E-Value: 8e-19
Query Start/End: Original strand, 25 - 141
Target Start/End: Complemental strand, 27583233 - 27583115
Alignment:
| Q |
25 |
ccacatccataagtaattcaactagtttagttggtcttatcttaatcaa--ttccatgtcccgagaagcttcaatcggaaaaccttggccaaaaacttcc |
122 |
Q |
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| T |
27583233 |
ccacatccataagtaattcatctagtttagttgaacatatattaatcaacatgccatgtctcgagaagcttcaatcaacaaaccttgtccaaaaatttcc |
27583134 |
T |
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| Q |
123 |
tttgttgacattggatttt |
141 |
Q |
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|||| |||||||||||| |
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| T |
27583133 |
attgtgtacattggatttt |
27583115 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 25 - 58
Target Start/End: Complemental strand, 27543892 - 27543859
Alignment:
| Q |
25 |
ccacatccataagtaattcaactagtttagttgg |
58 |
Q |
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| T |
27543892 |
ccacatccataagtaattcaactagtttagttgg |
27543859 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 78 - 141
Target Start/End: Complemental strand, 27543854 - 27543791
Alignment:
| Q |
78 |
atgtcccgagaagcttcaatcggaaaaccttggccaaaaacttcctttgttgacattggatttt |
141 |
Q |
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|||||| |||||||||||||| | ||||| || |||||||||||| |||| |||||||||||| |
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| T |
27543854 |
atgtcctgagaagcttcaatctgcaaaccatgtccaaaaacttccattgtgtacattggatttt |
27543791 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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