View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5704-21 (Length: 129)
Name: Solexa-NF5704-21
Description: NF5704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5704-21 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 118; Significance: 1e-60; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 118; E-Value: 1e-60
Query Start/End: Original strand, 8 - 129
Target Start/End: Original strand, 40775998 - 40776119
Alignment:
| Q |
8 |
gtagtcccaagtaggtagctcgaatggtgcgagctaagggacactgaaggagctttaagtaggaggtttagggtttgaaccataaaagctaacataacta |
107 |
Q |
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| T |
40775998 |
gtagtcccaagtaggtagctcgaatggtgcgagctaagggacactgaaggagctttaagtaggaggtttagggtttgaaccctaaaagctaacataacta |
40776097 |
T |
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| Q |
108 |
ctaacttactaacatgtaccta |
129 |
Q |
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| T |
40776098 |
ctaacttactaacatgtaccta |
40776119 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 54 - 122
Target Start/End: Original strand, 4067803 - 4067873
Alignment:
| Q |
54 |
aaggagctttaagtaggaggtttagggtttgaacca--taaaagctaacataactactaacttactaacat |
122 |
Q |
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| T |
4067803 |
aaggagttttaagcaggaggtttagagttcgaaccatgtaaaaactaacataaccatcaacttactaacat |
4067873 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 69 - 122
Target Start/End: Original strand, 10768267 - 10768320
Alignment:
| Q |
69 |
ggaggtttagggtttgaaccataaaagctaacataactactaacttactaacat |
122 |
Q |
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| T |
10768267 |
ggaggtttagggttcgaaccctagaaactaacataaccactaacttactaacat |
10768320 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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